SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000224
Component protein type	TssC
T6SS ID (Type)	T6SS00028 (Type i3)
Strain	Xanthomonas axonopodis pv. citri str. 306
Replicon	chromosome
Sequence	Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XAC_RS20880
Coordinate (Strand)	4873345..4874838 (-)
NCBI ID	WP_011052764.1
RefSeq	NC_003919
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
VipB	PF05943.14	1.6e-135	68..370
VipB_2	PF18945.2	2e-42	380..491

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 498 a.a.

						>T6CP000224 NC_003919:c4874838-4873345 [Xanthomonas citri pv. citri str. 306] [TssC]
MSATEAALATRSIETTERGDFAALLNREFRPKSERAKEEVESAVRTLAEQVLNRSDVVGEDVSQTIKAYIAEIDRTLTEQ
LNQILHHADLQQLEGAWRGLHYLVNNTETDQQLKIRVLNISKKELGKVLKRYKGTAWDQSPIFKKVYEQEYGQLGGEPYG
CLVGDYYFDQSPPDVELLNGIAQVAAAAHAPFIAAAAPKLMGMDNWSELSNPRDLAKIFSTPDYAAWRSLRESEDSKYIG
LAMPRTLSRLPYGAATSPVEDFDFEEDTAGADSNKYTWQNAAYAMAVNINRSFKQYGWCSRIRGIESGGAVEGLPTHTFP
TDDGGVDMKCPTEVAITDRRSAELDKMGLMPLVHRKNSDMAAFISAQSLNKPDEYDDPDATANAALGARLPYMFACCRFA
HYLKCIVRDKIGSFSDREQMQSWLTRWVTQYIDGDPSNSSEETKARKPLAAAEVVVEEVEGAPGYYSSKFFLKPHYQLEG
LTVSLRLVSRLPSAAKA*					

Nucleotide sequence: 1494 bp

						>T6CP000224 NC_003919:c4874838-4873345 [Xanthomonas citri pv. citri str. 306] [TssC]
ATGTCCGCGACCGAAGCCGCACTGGCCACCCGTAGCATCGAAACAACCGAGCGGGGCGACTTTGCCGCGCTGCTCAATCG
CGAGTTCCGTCCCAAGAGCGAGCGCGCCAAGGAAGAAGTGGAATCGGCGGTGCGCACGCTCGCCGAGCAGGTGCTCAACC
GCAGCGATGTGGTTGGCGAAGACGTATCGCAGACCATCAAGGCCTACATCGCCGAGATCGACCGCACGCTCACCGAACAG
CTCAACCAGATCCTGCATCACGCCGATCTGCAACAGCTCGAAGGCGCCTGGCGCGGCCTGCATTATCTGGTCAACAACAC
CGAGACCGACCAGCAGCTCAAGATCCGCGTGCTGAATATCAGCAAGAAAGAGTTGGGCAAGGTACTCAAACGCTACAAGG
GTACCGCGTGGGATCAGAGCCCCATCTTCAAGAAAGTCTACGAACAGGAATATGGCCAGCTTGGCGGCGAGCCGTATGGG
TGCCTGGTCGGCGATTATTACTTCGACCAGAGTCCGCCGGATGTGGAACTGCTCAACGGTATTGCGCAGGTGGCCGCTGC
CGCGCACGCACCGTTCATTGCCGCCGCCGCGCCCAAATTGATGGGCATGGACAACTGGAGCGAGCTCTCCAATCCGCGCG
ATCTGGCCAAGATTTTTTCCACGCCCGATTACGCTGCATGGCGCTCGCTGCGCGAATCCGAAGACTCCAAGTACATCGGT
CTGGCCATGCCGCGCACGCTCTCGCGTCTACCTTACGGCGCGGCCACCAGCCCGGTGGAAGACTTCGATTTCGAGGAAGA
CACCGCCGGCGCGGATTCCAACAAGTACACCTGGCAGAATGCCGCCTATGCGATGGCGGTGAACATCAACCGCTCGTTCA
AGCAGTACGGCTGGTGCTCGCGCATTCGCGGTATCGAGTCCGGCGGCGCAGTGGAAGGGTTGCCCACGCATACCTTTCCC
ACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCGAAGTGGCGATCACCGACCGTCGCTCCGCCGAACTGGACAAGAT
GGGCCTCATGCCGCTGGTACATCGCAAGAACTCGGACATGGCCGCCTTCATCAGCGCGCAGTCGCTCAACAAGCCCGACG
AATACGACGACCCGGATGCCACCGCCAACGCAGCATTAGGCGCGCGCCTGCCCTACATGTTTGCGTGCTGCCGCTTTGCG
CACTACCTCAAGTGCATCGTGCGCGACAAGATCGGTTCGTTCTCCGATCGCGAGCAGATGCAGAGCTGGCTGACACGCTG
GGTGACGCAATACATCGACGGCGACCCGTCCAACTCCAGCGAAGAAACCAAGGCGCGCAAGCCGCTGGCTGCCGCCGAAG
TGGTGGTGGAAGAAGTGGAAGGCGCGCCTGGCTACTACAGCTCCAAGTTCTTCCTCAAGCCGCATTACCAGCTGGAGGGC
CTGACCGTGTCGTTGCGGTTGGTCTCGCGGTTGCCCTCGGCCGCCAAGGCCTGA					