Pseudomonas putida KT2440
![experimental experimental](images/experimental.png)
![insilico insolico](images/in_silico.png)
T6SS ID | Type | Organism | Replicon (Accession) | Location | Function |
---|---|---|---|---|---|
T6SS00013 ![]() | i1 | Pseudomonas putida KT2440 | chromosome (NC_002947) | 2984253..3012550 | anti-bacterial |
T6SS00015 ![]() | i1 | Pseudomonas putida KT2440 | chromosome (NC_002947) | 4590927..4618219 | anti-bacterial |
T6SS00014 ![]() | i4b | Pseudomonas putida KT2440 | chromosome (NC_002947) | 3470069..3499780 | anti-bacterial |
![experimental experimental](images/experimental.png)
![insilico insolico](images/in_silico.png)
Regulator ID | Locus tag (Gene) | Related T6SS | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
---|---|---|---|---|---|---|---|---|---|
REG0074 ![]() |
PP_4373 (FleQ) | T6SS00014 ![]() |
protein | c-di-GMP regulatory pathway | Pseudomonas putida KT2440 | chromosome (NC_002947) | 4963882..4965357 (-) | 26991062 | K1-T6SS (hcp1) expression (↑) |
REG0075 ![]() |
PP_0952 (RopN) | T6SS00014 ![]() |
protein | c-di-GMP regulatory pathway | Pseudomonas putida KT2440 | chromosome (NC_002947) | 1094567..1096060 (-) | 26987688 | PP_4373 (FleQ) (↑) |
REG0076 ![]() |
PP_0914 (BifA) | T6SS00014 ![]() |
protein | c-di-GMP regulatory pathway | Pseudomonas putida KT2440 | chromosome (NC_002947) | 1055990..1058071 (-) | 26987650 | the levels of c-di-GMP (↓) |
![experimental experimental](images/experimental.png)
![insilico insolico](images/in_silico.png)
Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Related T6SS | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
---|---|---|---|---|---|---|---|---|
EFF01838 ![]() |
PP_3108 (Tke2) | Tde | IMU00355 ![]() |
T6SS00014 ![]() |
Pseudomonas putida KT2440 | chromosome (NC_002947) | 3511333..3515490 (+) | 499256461 |
EFF01837 ![]() |
PP_3089 (hcp1) | - | - | T6SS00014 ![]() |
Pseudomonas putida KT2440 | chromosome (NC_002947) | 3478061..3478579 (-) | 898330886 |
![experimental experimental](images/experimental.png)
![insilico insolico](images/in_silico.png)
Immunity protein ID | Locus tag (Gene) | Related T6SS | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Cognate effector |
---|---|---|---|---|---|---|---|
IMU00355 ![]() |
PP_5576 (Tki2) | T6SS00014 ![]() |
Pseudomonas putida KT2440 | chromosome (NC_002947) | 3515484..3515960 (+) | 898330862 | EFF01837 ![]() |
![experimental experimental](images/experimental.png)
![insilico insolico](images/in_silico.png)
ID | Locus tag (Gene) | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Response to T6SS attack | Known or putative function |
---|
![experimental experimental](images/experimental.png)
![insilico insolico](images/in_silico.png)
Accessory protein ID | Locus tag (Gene) | Related T6SS | Type | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Related structure protein | Related effector |
---|---|---|---|---|---|---|---|---|---|
ACP00009 ![]() |
PP_RS16060 (tagB1) | T6SS00014 ![]() |
structure affiliated protein | Pseudomonas putida KT2440 | chromosome (NC_002947) | 3496832..3497581 (-) | 898330878 | PP_RS15990 (TssA) | - |