Pseudomonas putida KT2440



Accession: NC_002947
 


experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
T6SS ID Type Organism Replicon (Accession) Location Function
T6SS00013 experimentali1Pseudomonas putida KT2440chromosome (NC_002947)2984253..3012550anti-bacterial
T6SS00015 experimentali1Pseudomonas putida KT2440chromosome (NC_002947)4590927..4618219anti-bacterial
T6SS00014 experimentali4bPseudomonas putida KT2440chromosome (NC_002947)3470069..3499780anti-bacterial

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0074 experimental PP_4373 (FleQ) T6SS00014 experimental protein c-di-GMP regulatory pathway Pseudomonas putida KT2440 chromosome (NC_002947) 4963882..4965357 (-) 26991062 K1-T6SS (hcp1) expression (↑)
REG0075 experimental PP_0952 (RopN) T6SS00014 experimental protein c-di-GMP regulatory pathway Pseudomonas putida KT2440 chromosome (NC_002947) 1094567..1096060 (-) 26987688 PP_4373 (FleQ) (↑)
REG0076 experimental PP_0914 (BifA) T6SS00014 experimental protein c-di-GMP regulatory pathway Pseudomonas putida KT2440 chromosome (NC_002947) 1055990..1058071 (-) 26987650 the levels of c-di-GMP (↓)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Effector ID Locus tag (Gene) Classification Cognate immunity protein Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF01838 experimental PP_3108 (Tke2) Tde IMU00355 experimental T6SS00014 experimental Pseudomonas putida KT2440 chromosome (NC_002947) 3511333..3515490 (+) 499256461
EFF01837 experimental PP_3089 (hcp1) - - T6SS00014 experimental Pseudomonas putida KT2440 chromosome (NC_002947) 3478061..3478579 (-) 898330886

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Immunity protein ID Locus tag (Gene) Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Cognate effector
IMU00355 experimental PP_5576 (Tki2) T6SS00014 experimental Pseudomonas putida KT2440 chromosome (NC_002947) 3515484..3515960 (+) 898330862 EFF01837 experimental

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
ID           Locus tag (Gene) Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Response to T6SS attack Known or putative function

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Accessory protein ID Locus tag (Gene) Related T6SS Type             Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Related structure protein Related effector
ACP00009 experimental PP_RS16060 (tagB1) T6SS00014 experimental structure affiliated protein Pseudomonas putida KT2440 chromosome (NC_002947) 3496832..3497581 (-) 898330878 PP_RS15990 (TssA) -