Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | ABFU19_RS16255 | Genome accession | NZ_CP155928 |
| Coordinates | 3761902..3762294 (-) | Length | 130 a.a. |
| NCBI ID | WP_047127091.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris strain CFBP 13427 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3756902..3767294
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFU19_RS16235 (ABFU19_16205) | - | 3757782..3758699 (-) | 918 | WP_119959175.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
| ABFU19_RS16240 (ABFU19_16210) | - | 3758696..3759532 (-) | 837 | WP_183110986.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| ABFU19_RS16245 (ABFU19_16215) | - | 3759522..3761348 (-) | 1827 | WP_119960373.1 | hypothetical protein | - |
| ABFU19_RS16250 (ABFU19_16220) | - | 3761391..3761810 (-) | 420 | WP_119959173.1 | pilin | - |
| ABFU19_RS16255 (ABFU19_16225) | pilA/pilAI | 3761902..3762294 (-) | 393 | WP_047127091.1 | pilin | Machinery gene |
| ABFU19_RS16260 (ABFU19_16230) | pilC | 3762644..3763906 (+) | 1263 | WP_119959172.1 | type II secretion system F family protein | Machinery gene |
| ABFU19_RS16265 (ABFU19_16235) | - | 3763913..3764776 (+) | 864 | WP_040940797.1 | A24 family peptidase | - |
| ABFU19_RS16270 (ABFU19_16240) | coaE | 3764790..3765404 (+) | 615 | WP_042594927.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 13517.71 Da Isoelectric Point: 9.5954
>NTDB_id=999780 ABFU19_RS16255 WP_047127091.1 3761902..3762294(-) (pilA/pilAI) [Xanthomonas campestris strain CFBP 13427]
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQVTAGLAEITPGKTQFEVKTNEGSTLSLPAQIGLSSSTTRCGI
SVTATTIVCNLKGNAAKVANKNVTLTRTSSTGTWACSSSVDAKYKPAGCS
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQVTAGLAEITPGKTQFEVKTNEGSTLSLPAQIGLSSSTTRCGI
SVTATTIVCNLKGNAAKVANKNVTLTRTSSTGTWACSSSVDAKYKPAGCS
Nucleotide
Download Length: 393 bp
>NTDB_id=999780 ABFU19_RS16255 WP_047127091.1 3761902..3762294(-) (pilA/pilAI) [Xanthomonas campestris strain CFBP 13427]
ATGAAGAAGCAGCAAGGCTTTACGCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTATGTTGCCAAGTCGCAGGTCACTGCTGGTCTGGCAGAGATCACTCCGGGCAAGACTCAGTTTG
AAGTAAAGACCAATGAAGGCAGTACGCTTAGCCTCCCAGCACAGATTGGTCTCAGCTCGTCCACCACGCGTTGTGGTATC
TCTGTTACCGCTACTACGATTGTTTGCAATCTCAAAGGAAATGCGGCAAAGGTAGCTAATAAGAATGTGACCTTGACGCG
TACCTCTAGCACGGGTACCTGGGCTTGCAGCTCCAGCGTTGACGCAAAATACAAGCCGGCCGGCTGCAGCTGA
ATGAAGAAGCAGCAAGGCTTTACGCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTATGTTGCCAAGTCGCAGGTCACTGCTGGTCTGGCAGAGATCACTCCGGGCAAGACTCAGTTTG
AAGTAAAGACCAATGAAGGCAGTACGCTTAGCCTCCCAGCACAGATTGGTCTCAGCTCGTCCACCACGCGTTGTGGTATC
TCTGTTACCGCTACTACGATTGTTTGCAATCTCAAAGGAAATGCGGCAAAGGTAGCTAATAAGAATGTGACCTTGACGCG
TACCTCTAGCACGGGTACCTGGGCTTGCAGCTCCAGCGTTGACGCAAAATACAAGCCGGCCGGCTGCAGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
54.815 |
100 |
0.569 |
| pilA | Acinetobacter baumannii strain A118 |
48.921 |
100 |
0.523 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
47.368 |
100 |
0.485 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.069 |
100 |
0.469 |
| pilA | Vibrio cholerae strain A1552 |
42.069 |
100 |
0.469 |
| pilA | Vibrio cholerae C6706 |
42.069 |
100 |
0.469 |
| pilA | Pseudomonas aeruginosa PAK |
39.597 |
100 |
0.454 |
| comP | Acinetobacter baylyi ADP1 |
38.356 |
100 |
0.431 |
| pilA2 | Legionella pneumophila str. Paris |
38.194 |
100 |
0.423 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.194 |
100 |
0.423 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.242 |
100 |
0.415 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.516 |
95.385 |
0.377 |