Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU19_RS16260 Genome accession   NZ_CP155928
Coordinates   3762644..3763906 (+) Length   420 a.a.
NCBI ID   WP_119959172.1    Uniprot ID   -
Organism   Xanthomonas campestris strain CFBP 13427     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3757644..3768906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU19_RS16235 (ABFU19_16205) - 3757782..3758699 (-) 918 WP_119959175.1 lysylphosphatidylglycerol synthase domain-containing protein -
  ABFU19_RS16240 (ABFU19_16210) - 3758696..3759532 (-) 837 WP_183110986.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  ABFU19_RS16245 (ABFU19_16215) - 3759522..3761348 (-) 1827 WP_119960373.1 hypothetical protein -
  ABFU19_RS16250 (ABFU19_16220) - 3761391..3761810 (-) 420 WP_119959173.1 pilin -
  ABFU19_RS16255 (ABFU19_16225) pilA/pilAI 3761902..3762294 (-) 393 WP_047127091.1 pilin Machinery gene
  ABFU19_RS16260 (ABFU19_16230) pilC 3762644..3763906 (+) 1263 WP_119959172.1 type II secretion system F family protein Machinery gene
  ABFU19_RS16265 (ABFU19_16235) - 3763913..3764776 (+) 864 WP_040940797.1 A24 family peptidase -
  ABFU19_RS16270 (ABFU19_16240) coaE 3764790..3765404 (+) 615 WP_042594927.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45778.20 Da        Isoelectric Point: 10.2311

>NTDB_id=999781 ABFU19_RS16260 WP_119959172.1 3762644..3763906(+) (pilC) [Xanthomonas campestris strain CFBP 13427]
MSAVRSTIKNKPASISAEQLMSPFVWEGTDKRGVKMKGEQVARNANMLRAELRRQGITPSVVKAKPKPLFGAAGKKITPK
EIAFFSRQMATMMKSGVPIVGSLEIIGNGHKNPRMKQMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLIKAGEGAGVL
ETVLDTIASYKENLEALKGKIKKALFYPAMVVAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVSYWW
LLLLVIVGSIVGFIFAYKRSLAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYE
KAVLRMREDVSVGYPVNVSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPLIMVFIGTV
VGGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=999781 ABFU19_RS16260 WP_119959172.1 3762644..3763906(+) (pilC) [Xanthomonas campestris strain CFBP 13427]
ATGTCGGCAGTCCGTAGCACCATCAAGAACAAACCGGCGAGCATCAGCGCCGAACAACTCATGAGCCCGTTCGTCTGGGA
GGGAACAGACAAGCGTGGCGTGAAGATGAAGGGCGAACAGGTGGCCCGCAACGCCAATATGTTGCGTGCGGAACTCCGTC
GGCAGGGCATTACGCCCAGCGTTGTGAAGGCAAAGCCCAAGCCCTTGTTCGGGGCGGCAGGCAAGAAGATCACGCCGAAG
GAAATTGCGTTCTTCAGCCGCCAGATGGCCACCATGATGAAGTCGGGCGTCCCGATTGTCGGGTCGCTGGAGATCATCGG
CAATGGTCACAAGAACCCGCGCATGAAGCAGATGGTGGGGCAGATCCGTACCGACATCGAAGGCGGATCTTCGCTGCACG
AGGCGGTAAGCAAGCATCCGGTGCAGTTTGACGAGCTGTATCGCAACCTGATCAAGGCAGGCGAAGGTGCTGGTGTGCTG
GAAACCGTCCTGGATACCATTGCCTCGTACAAAGAGAATCTGGAAGCCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTA
CCCCGCGATGGTCGTGGCAGTGGCCTTGTTGGTGAGCTCGATACTCTTGATTTGGGTCGTTCCGCAGTTCGAGGACGTGT
TCAAGGGGTTTGGCGCGGAACTGCCTGCATTTACCCAACTGATCGTCAATGCGTCCCGATTCATGGTCTCGTATTGGTGG
CTACTACTGCTTGTGATCGTTGGCTCGATCGTTGGCTTCATCTTTGCTTACAAGCGATCGCTTGCGATGCAGCATGGTAT
GGATCGGTTGGTGCTCAAGGTACCGATCATCGGCCAGATCATGCACAACAGCTCGATTGCGCGTTTTGCGCGCACTACCG
CGGTGACCTTCAAGGCGGGCGTGCCGCTGGTCGAAGCACTAGGCATCGTCGCCGGCGCCACCGGCAACTCGGTGTACGAG
AAAGCCGTGTTGCGCATGCGCGAGGATGTGTCGGTGGGCTATCCGGTCAACGTGTCGATGAAACAGGTCAACCTGTTTCC
GCATATGGTGATCCAGATGACGGCGATCGGCGAGGAAGCGGGCGCATTGGACGCCATGTTGTTCAAGGTGGCCGAGTACT
ACGAGCAGGAAGTGAACAATGCGGTGGACGCATTGAGCAGCCTCATCGAACCCTTGATCATGGTATTCATTGGTACAGTC
GTCGGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.985

95.714

0.507
  pilC Legionella pneumophila strain ERS1305867

51.095

97.857

0.5
  pilC Pseudomonas stutzeri DSM 10701

52.513

94.762

0.498
  pilC Acinetobacter baumannii D1279779

50.369

96.905

0.488
  pilG Neisseria gonorrhoeae MS11

43.719

94.762

0.414
  pilG Neisseria meningitidis 44/76-A

43.108

95

0.41
  pilC Vibrio cholerae strain A1552

41.814

94.524

0.395
  pilC Vibrio campbellii strain DS40M4

39.798

94.524

0.376

Multiple sequence alignment