Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ELZ60_RS06440 Genome accession   NZ_LR134090
Coordinates   1275723..1276997 (-) Length   424 a.a.
NCBI ID   WP_000102742.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC9555     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1270723..1281997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ60_RS06415 (NCTC9555_01209) hisS 1271284..1272546 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  ELZ60_RS06420 (NCTC9555_01210) aspS 1272562..1274328 (+) 1767 WP_000044802.1 aspartate--tRNA ligase -
  ELZ60_RS06430 - 1274661..1274789 (+) 129 WP_041204300.1 hypothetical protein -
  ELZ60_RS06435 (NCTC9555_01212) - 1274789..1275562 (+) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  ELZ60_RS06440 (NCTC9555_01213) rarA 1275723..1276997 (-) 1275 WP_000102742.1 replication-associated recombination protein A Machinery gene
  ELZ60_RS06445 (NCTC9555_01214) cymR 1277082..1277504 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  ELZ60_RS06450 (NCTC9555_01215) - 1277604..1277786 (+) 183 WP_000752909.1 CsbD family protein -
  ELZ60_RS06455 (NCTC9555_01216) - 1277826..1277972 (+) 147 WP_000009240.1 SAS049 family protein -
  ELZ60_RS06460 (NCTC9555_01217) - 1278209..1279222 (-) 1014 WP_000985900.1 LLM class flavin-dependent oxidoreductase -
  ELZ60_RS06465 (NCTC9555_01218) - 1279534..1280676 (+) 1143 WP_000409167.1 cysteine desulfurase family protein -
  ELZ60_RS06470 (NCTC9555_01219) mnmA 1280677..1281795 (+) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47237.81 Da        Isoelectric Point: 8.3539

>NTDB_id=997381 ELZ60_RS06440 WP_000102742.1 1275723..1276997(-) (rarA) [Staphylococcus aureus strain NCTC9555]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=997381 ELZ60_RS06440 WP_000102742.1 1275723..1276997(-) (rarA) [Staphylococcus aureus strain NCTC9555]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATACCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684

Multiple sequence alignment