Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AAGA51_RS05000 | Genome accession | NZ_CP151842 |
| Coordinates | 1105552..1105809 (+) | Length | 85 a.a. |
| NCBI ID | WP_102940708.1 | Uniprot ID | - |
| Organism | Vibrio diazotrophicus strain ATCC 33466 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1100552..1110809
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGA51_RS04990 | - | 1103062..1103334 (+) | 273 | WP_042486811.1 | HU family DNA-binding protein | - |
| AAGA51_RS04995 | ppiD | 1103489..1105348 (+) | 1860 | WP_042486808.1 | peptidylprolyl isomerase | - |
| AAGA51_RS05000 | comEA | 1105552..1105809 (+) | 258 | WP_102940708.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| AAGA51_RS05005 | cmk | 1106052..1106732 (+) | 681 | WP_042486803.1 | (d)CMP kinase | - |
| AAGA51_RS05010 | rpsA | 1106838..1108508 (+) | 1671 | WP_042486800.1 | 30S ribosomal protein S1 | - |
| AAGA51_RS05015 | ihfB | 1108817..1109095 (+) | 279 | WP_042486798.1 | integration host factor subunit beta | - |
| AAGA51_RS05020 | - | 1109225..1109512 (+) | 288 | WP_042486796.1 | LapA family protein | - |
| AAGA51_RS05025 | lapB | 1109525..1110694 (+) | 1170 | WP_042486793.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 85 a.a. Molecular weight: 9060.24 Da Isoelectric Point: 7.0100
>NTDB_id=981087 AAGA51_RS05000 WP_102940708.1 1105552..1105809(+) (comEA) [Vibrio diazotrophicus strain ATCC 33466]
MTSVSAADNSTNQTVKTDDIVITVNVNTASAEEISTLLKGVGLKKAQAIVEYRDQHGPFASKDDLTKVKGIGASTVKKNE
DRILL
MTSVSAADNSTNQTVKTDDIVITVNVNTASAEEISTLLKGVGLKKAQAIVEYRDQHGPFASKDDLTKVKGIGASTVKKNE
DRILL
Nucleotide
Download Length: 258 bp
>NTDB_id=981087 AAGA51_RS05000 WP_102940708.1 1105552..1105809(+) (comEA) [Vibrio diazotrophicus strain ATCC 33466]
ATGACGAGTGTGTCCGCAGCAGATAACAGTACTAATCAGACAGTGAAAACAGATGATATTGTGATAACGGTGAATGTGAA
TACCGCATCAGCCGAAGAAATATCCACTTTACTAAAAGGTGTTGGACTTAAAAAAGCGCAAGCGATTGTTGAATATCGTG
ACCAGCATGGGCCATTCGCATCTAAAGATGATCTTACTAAGGTAAAAGGTATTGGTGCCTCAACAGTAAAGAAAAACGAA
GACCGGATTCTTCTGTGA
ATGACGAGTGTGTCCGCAGCAGATAACAGTACTAATCAGACAGTGAAAACAGATGATATTGTGATAACGGTGAATGTGAA
TACCGCATCAGCCGAAGAAATATCCACTTTACTAAAAGGTGTTGGACTTAAAAAAGCGCAAGCGATTGTTGAATATCGTG
ACCAGCATGGGCCATTCGCATCTAAAGATGATCTTACTAAGGTAAAAGGTATTGGTGCCTCAACAGTAAAGAAAAACGAA
GACCGGATTCTTCTGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
61.176 |
100 |
0.612 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
70 |
82.353 |
0.576 |
| comEA | Vibrio cholerae C6706 |
70.588 |
80 |
0.565 |
| comEA | Vibrio cholerae strain A1552 |
70.588 |
80 |
0.565 |
| comEA | Acinetobacter baylyi ADP1 |
50.633 |
92.941 |
0.471 |
| comEA | Staphylococcus aureus MW2 |
46.154 |
91.765 |
0.424 |
| comEA | Staphylococcus aureus N315 |
46.154 |
91.765 |
0.424 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
54.839 |
72.941 |
0.4 |
| comEA | Acinetobacter baumannii strain A118 |
45.205 |
85.882 |
0.388 |
| comEA | Acinetobacter baumannii D1279779 |
43.836 |
85.882 |
0.376 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
51.613 |
72.941 |
0.376 |
| comEA | Latilactobacillus sakei subsp. sakei 23K |
38.095 |
98.824 |
0.376 |
| comE | Neisseria gonorrhoeae MS11 |
51.667 |
70.588 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
51.667 |
70.588 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
51.667 |
70.588 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
51.667 |
70.588 |
0.365 |