Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | AABM56_RS18485 | Genome accession | NZ_CP150916 |
| Coordinates | 3984972..3985406 (+) | Length | 144 a.a. |
| NCBI ID | WP_347883609.1 | Uniprot ID | - |
| Organism | Pseudomonas aestiva strain DGS32 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3979972..3990406
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABM56_RS18465 | coaE | 3980157..3980768 (-) | 612 | WP_347883605.1 | dephospho-CoA kinase | - |
| AABM56_RS18470 | pilD | 3980765..3981637 (-) | 873 | WP_347883606.1 | A24 family peptidase | Machinery gene |
| AABM56_RS18475 | pilC | 3981637..3982854 (-) | 1218 | WP_347883607.1 | type II secretion system F family protein | Machinery gene |
| AABM56_RS18480 | pilB | 3983065..3984759 (-) | 1695 | WP_347883608.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AABM56_RS18485 | comP | 3984972..3985406 (+) | 435 | WP_347883609.1 | pilin | Machinery gene |
| AABM56_RS18490 | - | 3985842..3987167 (+) | 1326 | WP_347884133.1 | Wzy polymerase domain-containing protein | - |
| AABM56_RS18495 | - | 3987155..3988066 (+) | 912 | WP_347883610.1 | glycosyltransferase family 2 protein | - |
| AABM56_RS18500 | - | 3988063..3988959 (+) | 897 | WP_347883611.1 | glycosyltransferase | - |
| AABM56_RS18505 | - | 3989070..3990068 (-) | 999 | WP_347883612.1 | SDR family oxidoreductase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14405.48 Da Isoelectric Point: 8.4982
>NTDB_id=973729 AABM56_RS18485 WP_347883609.1 3984972..3985406(+) (comP) [Pseudomonas aestiva strain DGS32]
MNAQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRARVSEGLSLASPARLAVAENAANGASSLAQGWSAPPATTNVSSV
SVASDTGVISIVTTSRAGNVTLTLTPKSSGAALSSGTVPPGAITWVCAVSDATKAKYVPSECRG
MNAQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRARVSEGLSLASPARLAVAENAANGASSLAQGWSAPPATTNVSSV
SVASDTGVISIVTTSRAGNVTLTLTPKSSGAALSSGTVPPGAITWVCAVSDATKAKYVPSECRG
Nucleotide
Download Length: 435 bp
>NTDB_id=973729 AABM56_RS18485 WP_347883609.1 3984972..3985406(+) (comP) [Pseudomonas aestiva strain DGS32]
ATGAATGCTCAGAAAGGCTTTACTTTGATCGAGCTGATGATCGTGGTAGCGATCATCGGCATTTTGGCGGCGGTGGCAAT
TCCTGCCTACCAAGACTACACAGTTCGCGCTAGGGTCTCTGAAGGCCTTAGCCTGGCTTCGCCCGCTAGGCTTGCAGTAG
CTGAGAATGCTGCAAATGGCGCTTCTAGTTTGGCACAGGGCTGGTCGGCTCCGCCCGCAACTACTAACGTCAGCTCTGTT
TCTGTTGCAAGTGATACAGGCGTTATTAGTATTGTTACTACCTCTCGCGCAGGAAACGTCACCTTGACCTTGACGCCTAA
ATCTAGTGGTGCAGCTTTGAGCTCTGGAACTGTTCCGCCGGGTGCAATTACGTGGGTTTGCGCAGTGAGCGATGCTACAA
AGGCGAAATACGTCCCCTCCGAATGCCGCGGCTAA
ATGAATGCTCAGAAAGGCTTTACTTTGATCGAGCTGATGATCGTGGTAGCGATCATCGGCATTTTGGCGGCGGTGGCAAT
TCCTGCCTACCAAGACTACACAGTTCGCGCTAGGGTCTCTGAAGGCCTTAGCCTGGCTTCGCCCGCTAGGCTTGCAGTAG
CTGAGAATGCTGCAAATGGCGCTTCTAGTTTGGCACAGGGCTGGTCGGCTCCGCCCGCAACTACTAACGTCAGCTCTGTT
TCTGTTGCAAGTGATACAGGCGTTATTAGTATTGTTACTACCTCTCGCGCAGGAAACGTCACCTTGACCTTGACGCCTAA
ATCTAGTGGTGCAGCTTTGAGCTCTGGAACTGTTCCGCCGGGTGCAATTACGTGGGTTTGCGCAGTGAGCGATGCTACAA
AGGCGAAATACGTCCCCTCCGAATGCCGCGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
50.314 |
100 |
0.556 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
50.318 |
100 |
0.549 |
| pilA2 | Legionella pneumophila str. Paris |
52.083 |
100 |
0.521 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.083 |
100 |
0.521 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
40.606 |
100 |
0.465 |
| pilE | Neisseria gonorrhoeae MS11 |
39.394 |
100 |
0.451 |
| pilA | Acinetobacter baumannii strain A118 |
41.892 |
100 |
0.431 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.267 |
100 |
0.417 |
| pilA | Pseudomonas aeruginosa PAK |
37.342 |
100 |
0.41 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.889 |
100 |
0.389 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.735 |
100 |
0.375 |