Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABM56_RS18470 Genome accession   NZ_CP150916
Coordinates   3980765..3981637 (-) Length   290 a.a.
NCBI ID   WP_347883606.1    Uniprot ID   -
Organism   Pseudomonas aestiva strain DGS32     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3975765..3986637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM56_RS18450 recC 3975840..3979271 (-) 3432 WP_347883603.1 exodeoxyribonuclease V subunit gamma -
  AABM56_RS18455 - 3979453..3979950 (+) 498 WP_347883604.1 hypothetical protein -
  AABM56_RS18460 yacG 3979963..3980160 (-) 198 WP_007160931.1 DNA gyrase inhibitor YacG -
  AABM56_RS18465 coaE 3980157..3980768 (-) 612 WP_347883605.1 dephospho-CoA kinase -
  AABM56_RS18470 pilD 3980765..3981637 (-) 873 WP_347883606.1 A24 family peptidase Machinery gene
  AABM56_RS18475 pilC 3981637..3982854 (-) 1218 WP_347883607.1 type II secretion system F family protein Machinery gene
  AABM56_RS18480 pilB 3983065..3984759 (-) 1695 WP_347883608.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AABM56_RS18485 comP 3984972..3985406 (+) 435 WP_347883609.1 pilin Machinery gene

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31620.64 Da        Isoelectric Point: 8.2337

>NTDB_id=973726 AABM56_RS18470 WP_347883606.1 3980765..3981637(-) (pilD) [Pseudomonas aestiva strain DGS32]
MALLELLASAPLAAALCALILGLLVGSFLNVVVYRLPVMLRRDWQTEAREVLELPAEPVGPAFNLARPASRCPHCQRAVR
PWENVPVVSYLLLRGRCKGCQASISLRYPLVELACGLLSAWVIWHLGVTWQGGAFLLLTWGLLAASLIDADHQLLPDVIV
LPLLWLGLVANQFGLFTNLGDAVWGAVAGYLSLWLVFQLFRLVTGKEGMGYGDFKLLALLGSWGGWQILPLTILLSSLVG
AILGVITLRLRRAETSTPLPFGPYLAVAGWIALLWGDQITGLYLNFAGFR

Nucleotide


Download         Length: 873 bp        

>NTDB_id=973726 AABM56_RS18470 WP_347883606.1 3980765..3981637(-) (pilD) [Pseudomonas aestiva strain DGS32]
ATGGCGCTGCTGGAATTATTAGCCAGCGCGCCTCTGGCCGCGGCGCTTTGCGCGCTGATCCTGGGGTTGCTGGTGGGCAG
CTTTCTCAATGTGGTGGTCTATCGGCTGCCGGTGATGCTGAGGCGGGATTGGCAGACGGAGGCGCGTGAGGTGCTGGAGC
TGCCGGCCGAGCCCGTGGGGCCTGCTTTCAATCTGGCTCGGCCTGCCTCGCGTTGCCCCCATTGCCAGCGGGCCGTGCGG
CCCTGGGAAAACGTGCCGGTGGTGAGTTATCTACTCCTGCGCGGTCGTTGCAAGGGTTGTCAGGCTTCCATCAGCCTACG
TTACCCGCTGGTTGAGCTGGCTTGTGGGCTGCTGTCCGCCTGGGTCATCTGGCACCTAGGCGTGACCTGGCAGGGCGGGG
CCTTTCTGCTGCTGACCTGGGGCCTGCTGGCGGCCAGTTTGATCGATGCCGATCACCAGCTGTTGCCGGATGTGATCGTT
CTGCCGCTGTTGTGGCTGGGGCTGGTCGCCAATCAGTTCGGGCTGTTCACCAACCTCGGCGATGCCGTCTGGGGCGCGGT
GGCGGGTTATCTGAGTCTGTGGCTGGTGTTCCAGCTGTTCCGCCTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCGCTGCTCGGTTCCTGGGGGGGCTGGCAGATCCTGCCCTTGACCATCCTGCTGTCATCGCTGGTGGGT
GCCATCCTGGGCGTCATCACCCTGCGGCTGCGGCGTGCGGAAACCAGTACGCCCCTGCCCTTTGGCCCTTATCTGGCCGT
GGCGGGGTGGATTGCCTTGCTCTGGGGTGATCAAATAACCGGCCTGTACCTGAACTTCGCCGGATTCCGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(137-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

49.296

97.931

0.483
  pilD Acinetobacter baumannii D1279779

51.685

92.069

0.476
  pilD Vibrio campbellii strain DS40M4

48.239

97.931

0.472
  pilD Acinetobacter nosocomialis M2

50.936

92.069

0.469
  pilD Neisseria gonorrhoeae MS11

48.913

95.172

0.466

Multiple sequence alignment