Detailed information NTG0973727

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: AABM56_RS18475
• Genome accession: NZ_CP150916
• Coordinates: 3981637..3982854 (-)
• Length: 405 a.a.
• NCBI ID: WP_347883607.1
• Uniprot ID: -
• Organism: Pseudomonas aestiva strain DGS32
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3976637..3987854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABM56_RS18455	-	3979453..3979950 (+)	498	WP_347883604.1	hypothetical protein	-
AABM56_RS18460	yacG	3979963..3980160 (-)	198	WP_007160931.1	DNA gyrase inhibitor YacG	-
AABM56_RS18465	coaE	3980157..3980768 (-)	612	WP_347883605.1	dephospho-CoA kinase	-
AABM56_RS18470	pilD	3980765..3981637 (-)	873	WP_347883606.1	A24 family peptidase	Machinery gene
AABM56_RS18475	pilC	3981637..3982854 (-)	1218	WP_347883607.1	type II secretion system F family protein	Machinery gene
AABM56_RS18480	pilB	3983065..3984759 (-)	1695	WP_347883608.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AABM56_RS18485	comP	3984972..3985406 (+)	435	WP_347883609.1	pilin	Machinery gene
AABM56_RS18490	-	3985842..3987167 (+)	1326	WP_347884133.1	Wzy polymerase domain-containing protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44129.04 Da
• Isoelectric Point: 9.8100

>NTDB_id=973727 AABM56_RS18475 WP_347883607.1 3981637..3982854(-) (pilC) [Pseudomonas aestiva strain DGS32]
MADKAIKMGSFTWEGTDRKGTKVKGEMTGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPMDIALFTRQLATMLT
AGVPLLQAFDIIGEGFDNPNMRKMVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIIVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLMVIAISEVLQELWLLVLGGLFVLAFVLR
HFYKKSEKFRDATDRGLLKIPLIGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide

• Length: 1218 bp

>NTDB_id=973727 AABM56_RS18475 WP_347883607.1 3981637..3982854(-) (pilC) [Pseudomonas aestiva strain DGS32]
ATGGCCGATAAAGCTATCAAGATGGGCAGCTTCACCTGGGAGGGGACCGATCGCAAAGGGACCAAGGTGAAGGGCGAGAT
GACGGGCCTGAATCCTGCGTTGATCAAGGCGCAGTTGCGCAAGCAGGGGATCAATCCGACCCGGGTGCGCAAGAAGTCGG
TGTCGCTATTCGGCAAGGGCAAGAAGATCAAGCCCATGGATATCGCCCTGTTTACTCGACAGCTGGCGACCATGCTGACC
GCAGGTGTGCCTCTGCTCCAGGCCTTTGACATCATTGGTGAGGGCTTCGACAATCCCAACATGCGCAAGATGGTCGACGA
CATCAAGCAGGATGTTGCCGCAGGTAATAGCCTGGCCAACTCCTTGCGCAAGCAGCCGCAGTATTTCGACGACCTCTATT
GCAATCTGGTGGATGCGGGTGAGCAATCGGGTGCCTTGGAGACCTTGCTGGATCGGGTAGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGAAGAAGATCAAGAAGGCCATGACCTATCCGGCGGCAGTTATCATCGTCGCGGTAATCGTGTCGGCCAT
TCTGCTGATCAAGGTGGTGCCTCAGTTCCAATCGGTGTTCGAGGGCTTCGGGGCGCAACTACCTGCGTTCACCCTGATGG
TGATCGCCATTTCCGAAGTCCTGCAGGAGTTGTGGCTGCTGGTACTGGGCGGGCTCTTCGTGCTGGCCTTCGTCCTGCGG
CACTTCTACAAGAAATCGGAAAAATTCCGTGACGCTACCGACCGTGGACTGCTGAAGATTCCGTTGATTGGCTCCATTCT
CTACAAGTCGGCCATTGCCCGTTATGCCCGTACTCTCGCCACCACTTTTGCGGCCGGCGTTCCGCTGGTGGATGCCCTGG
ACTCGGTGGCGGGTGCGACCGGCAATGTAGTGTTCCGCAACGCCGTGGAGAAGATCAAGGGCGATGTCTCCACCGGTATG
CAGCTCAACTTCTCCATGCGTACGACCGGGGTGTTCTCGTCCATGGCCATCCAGATGACGGCCATCGGTGAGGAGTCGGG
TTCGCTGGACGAAATGCTGTCCAAGGTGGCGACCTTCTATGAGGACGAAGTCGACAACATGGTCGACAATCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTCCTCGGGGTGCTGGTGGGTGGTCTGATCATTGCCATGTACCTGCCCATCTTCCAG
CTCGGCTCGGTGGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	78.765	100	0.788
pilC	Acinetobacter baylyi ADP1	58.824	100	0.593
pilC	Acinetobacter baumannii D1279779	58.911	99.753	0.588
pilC	Legionella pneumophila strain ERS1305867	54.408	98.025	0.533
pilG	Neisseria meningitidis 44/76-A	45.32	100	0.454
pilG	Neisseria gonorrhoeae MS11	45.185	100	0.452
pilC	Vibrio cholerae strain A1552	42.963	100	0.43
pilC	Vibrio campbellii strain DS40M4	40.786	100	0.41
pilC	Thermus thermophilus HB27	37.965	99.506	0.378