Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   V5F97_RS02690 Genome accession   NZ_CP145057
Coordinates   524239..524712 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_alpha_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519239..529712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F97_RS02665 (V5F97_02670) dnaB 519801..521207 (+) 1407 WP_050169632.1 replicative DNA helicase -
  V5F97_RS02670 (V5F97_02675) pilH 521362..522027 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F97_RS02675 (V5F97_02680) pilV 522059..522670 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  V5F97_RS02680 (V5F97_02685) pilJ 522667..523647 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  V5F97_RS02685 (V5F97_02690) pilK 523626..524237 (+) 612 WP_050169630.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F97_RS02690 (V5F97_02695) pilL 524239..524712 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5F97_RS02695 (V5F97_02700) - 524782..525090 (-) 309 WP_050161303.1 AzlD family protein -
  V5F97_RS02700 (V5F97_02705) - 525087..525798 (-) 712 Protein_522 AzlC family ABC transporter permease -
  V5F97_RS02705 (V5F97_02710) dut 525964..526416 (+) 453 WP_047951389.1 dUTP diphosphatase -
  V5F97_RS02710 (V5F97_02715) dapC 526488..527675 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5F97_RS02715 (V5F97_02720) yaaA 527831..528610 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=936602 V5F97_RS02690 WP_012503482.1 524239..524712(+) (pilL) [Neisseria gonorrhoeae strain WHO_alpha_2024]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=936602 V5F97_RS02690 WP_012503482.1 524239..524712(+) (pilL) [Neisseria gonorrhoeae strain WHO_alpha_2024]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854