Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VNN36_RS03305 Genome accession   NZ_CP141717
Coordinates   662496..662801 (-) Length   101 a.a.
NCBI ID   WP_016171026.1    Uniprot ID   -
Organism   Lactococcus garvieae strain R22-8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 657496..667801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN36_RS03280 (VNN36_03280) - 659386..660255 (+) 870 WP_339014029.1 RluA family pseudouridine synthase -
  VNN36_RS03285 (VNN36_03285) - 660341..661186 (-) 846 WP_003133722.1 zinc ABC transporter substrate-binding protein -
  VNN36_RS03290 (VNN36_03290) comYF 661419..661859 (-) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  VNN36_RS03295 (VNN36_03295) comGE 661840..662073 (-) 234 WP_339014031.1 competence type IV pilus minor pilin ComGE -
  VNN36_RS03300 (VNN36_03300) comGD 662105..662521 (-) 417 WP_003133718.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN36_RS03305 (VNN36_03305) comYC 662496..662801 (-) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN36_RS03310 (VNN36_03310) comGB 662820..663839 (-) 1020 WP_339014494.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN36_RS03315 (VNN36_03315) comGA 663778..664722 (-) 945 WP_339014497.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN36_RS03320 (VNN36_03320) rpsU 664910..665086 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN36_RS03325 (VNN36_03325) guaB 665209..666690 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11397.28 Da        Isoelectric Point: 9.9218

>NTDB_id=918761 VNN36_RS03305 WP_016171026.1 662496..662801(-) (comYC) [Lactococcus garvieae strain R22-8]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=918761 VNN36_RS03305 WP_016171026.1 662496..662801(-) (comYC) [Lactococcus garvieae strain R22-8]
ATGGAAAAAAAGAGATTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAAGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCAAATGAAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

67.368

94.059

0.634
  comYC Streptococcus mutans UA159

67.368

94.059

0.634
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus mitis SK321

61.616

98.02

0.604
  comGC/cglC Streptococcus pneumoniae Rx1

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae D39

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae TIGR4

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae R6

57.576

98.02

0.564
  comGC/cglC Streptococcus mitis NCTC 12261

61.538

90.099

0.554
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

49.367

78.218

0.386
  comGC Staphylococcus aureus N315

49.367

78.218

0.386