Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN36_RS03300 Genome accession   NZ_CP141717
Coordinates   662105..662521 (-) Length   138 a.a.
NCBI ID   WP_003133718.1    Uniprot ID   -
Organism   Lactococcus garvieae strain R22-8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 657105..667521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN36_RS03280 (VNN36_03280) - 659386..660255 (+) 870 WP_339014029.1 RluA family pseudouridine synthase -
  VNN36_RS03285 (VNN36_03285) - 660341..661186 (-) 846 WP_003133722.1 zinc ABC transporter substrate-binding protein -
  VNN36_RS03290 (VNN36_03290) comYF 661419..661859 (-) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  VNN36_RS03295 (VNN36_03295) comGE 661840..662073 (-) 234 WP_339014031.1 competence type IV pilus minor pilin ComGE -
  VNN36_RS03300 (VNN36_03300) comGD 662105..662521 (-) 417 WP_003133718.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN36_RS03305 (VNN36_03305) comYC 662496..662801 (-) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN36_RS03310 (VNN36_03310) comGB 662820..663839 (-) 1020 WP_339014494.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN36_RS03315 (VNN36_03315) comGA 663778..664722 (-) 945 WP_339014497.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN36_RS03320 (VNN36_03320) rpsU 664910..665086 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN36_RS03325 (VNN36_03325) guaB 665209..666690 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15806.49 Da        Isoelectric Point: 10.0791

>NTDB_id=918760 VNN36_RS03300 WP_003133718.1 662105..662521(-) (comGD) [Lactococcus garvieae strain R22-8]
MKNVMYRIKALTLLESLLVLFLCSFVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGALYSQ
EEMVKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918760 VNN36_RS03300 WP_003133718.1 662105..662521(-) (comGD) [Lactococcus garvieae strain R22-8]
ATGAAAAACGTAATGTACCGAATTAAAGCCTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAGGTTCGGTCAAACAAAGTGTGAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGTCTTT
ATAAGGATACTCAACGCATGGCGGGACTAAAGGGACAGCAACAGACGTTGAGTGCGAGCAATGGTGCACTCTATAGCCAA
GAGGAAATGGTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACAATCTCTTATCAATTGGAGATTGGAAGCGGAAAATATA
AGAAAAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

40.909

95.652

0.391
  comYD Streptococcus mutans UA159

40.909

95.652

0.391
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

38.76

93.478

0.362