Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RGF10_RS07240 | Genome accession | NZ_CP137761 |
| Coordinates | 1412875..1413945 (+) | Length | 356 a.a. |
| NCBI ID | WP_318508423.1 | Uniprot ID | - |
| Organism | Bacillus sp. T3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1407875..1418945
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RGF10_RS07215 | - | 1408919..1409092 (-) | 174 | WP_318508419.1 | DUF2759 domain-containing protein | - |
| RGF10_RS07220 | - | 1409358..1409990 (+) | 633 | WP_318508420.1 | MBL fold metallo-hydrolase | - |
| RGF10_RS07225 | - | 1410147..1411247 (+) | 1101 | WP_318508421.1 | class I SAM-dependent methyltransferase | - |
| RGF10_RS07230 | - | 1411316..1411546 (-) | 231 | Protein_1389 | DUF2626 domain-containing protein | - |
| RGF10_RS07235 | - | 1411762..1412463 (-) | 702 | WP_318508422.1 | helix-turn-helix transcriptional regulator | - |
| RGF10_RS07240 | comGA | 1412875..1413945 (+) | 1071 | WP_318508423.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RGF10_RS07245 | comGB | 1413938..1414966 (+) | 1029 | WP_318508424.1 | competence type IV pilus assembly protein ComGB | - |
| RGF10_RS07250 | comGC | 1414992..1415306 (+) | 315 | WP_318509357.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RGF10_RS07255 | comGD | 1415306..1415746 (+) | 441 | WP_318508425.1 | competence type IV pilus minor pilin ComGD | - |
| RGF10_RS07260 | - | 1415730..1416062 (+) | 333 | WP_318508426.1 | hypothetical protein | - |
| RGF10_RS07265 | comGF | 1416010..1416480 (+) | 471 | WP_318508427.1 | competence type IV pilus minor pilin ComGF | - |
| RGF10_RS07270 | comGG | 1416481..1416861 (+) | 381 | WP_318508428.1 | competence type IV pilus minor pilin ComGG | - |
| RGF10_RS07275 | - | 1416877..1417371 (+) | 495 | WP_318508429.1 | shikimate kinase | - |
| RGF10_RS07280 | - | 1417426..1417605 (+) | 180 | WP_318508430.1 | YqzE family protein | - |
| RGF10_RS07285 | - | 1417849..1418640 (-) | 792 | WP_318508431.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40441.48 Da Isoelectric Point: 8.5541
>NTDB_id=900566 RGF10_RS07240 WP_318508423.1 1412875..1413945(+) (comGA) [Bacillus sp. T3]
MNSIEQLAERVLTDAVRNNATDIHFLPRKHDTLVQLRIGNKLIPKISIPKHECDRLISHFKFTASMDIGERRRPQNGAFS
YEVDEKSIGLRLSTLPASNSESLVIRLLPQQQQIPFEQLSLFPKMTRKLIALLKHSHGLIIFTGPTGSGKTTTLYSLLNE
TSHLFQRNVITLEDPIEKEYDQVLQVQVNEKAGVSYTTGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVLSTLH
TRNAKGAIYRLNEFGVNWQEIEQTVVAVTAQRLVELTCPYCDGDCSPYCFSYGKSKRANVMELLNGRALTTVLQEVRGEK
VQLRYPYQTLKDYIKKGIALGYIKENEYDRWVYQDE
MNSIEQLAERVLTDAVRNNATDIHFLPRKHDTLVQLRIGNKLIPKISIPKHECDRLISHFKFTASMDIGERRRPQNGAFS
YEVDEKSIGLRLSTLPASNSESLVIRLLPQQQQIPFEQLSLFPKMTRKLIALLKHSHGLIIFTGPTGSGKTTTLYSLLNE
TSHLFQRNVITLEDPIEKEYDQVLQVQVNEKAGVSYTTGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVLSTLH
TRNAKGAIYRLNEFGVNWQEIEQTVVAVTAQRLVELTCPYCDGDCSPYCFSYGKSKRANVMELLNGRALTTVLQEVRGEK
VQLRYPYQTLKDYIKKGIALGYIKENEYDRWVYQDE
Nucleotide
Download Length: 1071 bp
>NTDB_id=900566 RGF10_RS07240 WP_318508423.1 1412875..1413945(+) (comGA) [Bacillus sp. T3]
TTGAACTCGATCGAGCAATTAGCCGAAAGAGTCCTTACTGATGCAGTTCGCAACAATGCAACCGACATCCACTTCCTCCC
TCGCAAACATGACACCCTTGTACAGCTCAGAATCGGAAATAAATTGATCCCAAAAATTTCTATCCCAAAACATGAATGTG
ATCGACTGATTTCCCACTTTAAATTTACAGCATCTATGGATATTGGGGAGCGTAGACGACCTCAAAATGGAGCATTTTCC
TACGAGGTTGATGAAAAATCAATAGGTCTCCGTTTATCAACGTTACCAGCAAGTAACAGCGAAAGCCTAGTCATCCGACT
ACTGCCACAGCAACAACAAATTCCTTTCGAACAGCTGTCTTTATTTCCAAAAATGACAAGAAAATTAATTGCTCTCCTCA
AGCATTCGCACGGTCTTATTATTTTTACAGGGCCAACAGGATCTGGCAAAACGACCACACTGTATTCACTTCTTAACGAA
ACCTCTCATTTATTCCAAAGAAATGTTATTACTTTAGAAGATCCCATCGAAAAAGAATATGATCAGGTTCTTCAAGTTCA
AGTGAACGAGAAGGCTGGTGTGTCTTACACAACAGGACTAAAAGCAATCCTTAGGCATGATCCTGATATTATTATGGTCG
GAGAAATTCGTGACGCAGAGACAGCCAAAATTGCAGTGAGAGCGGCTCTAACTGGACATTTAGTGTTAAGTACTTTGCAT
ACGAGGAATGCAAAAGGGGCGATTTATCGGTTAAATGAATTCGGTGTGAACTGGCAAGAAATAGAACAGACAGTCGTAGC
TGTTACGGCACAAAGATTAGTAGAGTTAACTTGTCCGTATTGTGATGGGGATTGCTCACCATACTGTTTTTCTTATGGAA
AGTCAAAAAGAGCAAATGTTATGGAACTGTTAAACGGGAGAGCATTGACGACGGTGTTGCAGGAAGTACGAGGGGAAAAG
GTACAGCTACGATATCCTTATCAAACGTTAAAGGATTATATCAAGAAGGGGATTGCACTAGGCTATATTAAAGAAAATGA
ATATGATCGCTGGGTGTATCAAGATGAATAA
TTGAACTCGATCGAGCAATTAGCCGAAAGAGTCCTTACTGATGCAGTTCGCAACAATGCAACCGACATCCACTTCCTCCC
TCGCAAACATGACACCCTTGTACAGCTCAGAATCGGAAATAAATTGATCCCAAAAATTTCTATCCCAAAACATGAATGTG
ATCGACTGATTTCCCACTTTAAATTTACAGCATCTATGGATATTGGGGAGCGTAGACGACCTCAAAATGGAGCATTTTCC
TACGAGGTTGATGAAAAATCAATAGGTCTCCGTTTATCAACGTTACCAGCAAGTAACAGCGAAAGCCTAGTCATCCGACT
ACTGCCACAGCAACAACAAATTCCTTTCGAACAGCTGTCTTTATTTCCAAAAATGACAAGAAAATTAATTGCTCTCCTCA
AGCATTCGCACGGTCTTATTATTTTTACAGGGCCAACAGGATCTGGCAAAACGACCACACTGTATTCACTTCTTAACGAA
ACCTCTCATTTATTCCAAAGAAATGTTATTACTTTAGAAGATCCCATCGAAAAAGAATATGATCAGGTTCTTCAAGTTCA
AGTGAACGAGAAGGCTGGTGTGTCTTACACAACAGGACTAAAAGCAATCCTTAGGCATGATCCTGATATTATTATGGTCG
GAGAAATTCGTGACGCAGAGACAGCCAAAATTGCAGTGAGAGCGGCTCTAACTGGACATTTAGTGTTAAGTACTTTGCAT
ACGAGGAATGCAAAAGGGGCGATTTATCGGTTAAATGAATTCGGTGTGAACTGGCAAGAAATAGAACAGACAGTCGTAGC
TGTTACGGCACAAAGATTAGTAGAGTTAACTTGTCCGTATTGTGATGGGGATTGCTCACCATACTGTTTTTCTTATGGAA
AGTCAAAAAGAGCAAATGTTATGGAACTGTTAAACGGGAGAGCATTGACGACGGTGTTGCAGGAAGTACGAGGGGAAAAG
GTACAGCTACGATATCCTTATCAAACGTTAAAGGATTATATCAAGAAGGGGATTGCACTAGGCTATATTAAAGAAAATGA
ATATGATCGCTGGGTGTATCAAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
57.423 |
100 |
0.576 |
| pilB | Glaesserella parasuis strain SC1401 |
38.983 |
99.438 |
0.388 |