Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RGF10_RS06975 Genome accession   NZ_CP137761
Coordinates   1363349..1364107 (+) Length   252 a.a.
NCBI ID   WP_318508373.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1358349..1369107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS06945 - 1358374..1360529 (+) 2156 Protein_1332 HD family phosphohydrolase -
  RGF10_RS06950 ybeY 1360526..1360996 (+) 471 WP_318508365.1 rRNA maturation RNase YbeY -
  RGF10_RS06955 - 1360974..1361357 (+) 384 WP_318508367.1 diacylglycerol kinase family protein -
  RGF10_RS06960 - 1361583..1361990 (+) 408 WP_412176686.1 cytidine deaminase -
  RGF10_RS06965 era 1361983..1362900 (+) 918 WP_318508370.1 GTPase Era -
  RGF10_RS06970 - 1363173..1363316 (+) 144 WP_318508371.1 YqzL family protein -
  RGF10_RS06975 recO 1363349..1364107 (+) 759 WP_318508373.1 DNA repair protein RecO Machinery gene
  RGF10_RS06980 - 1364434..1365816 (+) 1383 WP_318509352.1 glycine--tRNA ligase -
  RGF10_RS06985 - 1366057..1366689 (+) 633 WP_318508375.1 helix-turn-helix transcriptional regulator -
  RGF10_RS06990 - 1366718..1367536 (+) 819 WP_318508376.1 pyruvate, water dikinase regulatory protein -
  RGF10_RS06995 - 1367890..1368342 (+) 453 WP_318509354.1 YaiI/YqxD family protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28633.14 Da        Isoelectric Point: 8.2009

>NTDB_id=900565 RGF10_RS06975 WP_318508373.1 1363349..1364107(+) (recO) [Bacillus sp. T3]
MLQKCEGIVIRTTDYGETNKVVTLYTREWGKVGVMARGAKKPNSRLSAITQLFTYGYFLIQRGSGLGSLQQGEMISSLRS
IREDIFLTAYASYIVDLTDKATADENKPNPFLFELLNQTLTLINEGYDLEVLTNIYEMKMLDLFGLHPCLNQCAVCGNTN
GQFSFSVREGGFICHQCVVQDPYAIKISPSTVKLLRIFYYFDLARLGNIDVKPETKAQLKKVISAYYDEYSGLHLKTKKF
LNQMDKMRDMLT

Nucleotide


Download         Length: 759 bp        

>NTDB_id=900565 RGF10_RS06975 WP_318508373.1 1363349..1364107(+) (recO) [Bacillus sp. T3]
ATGCTTCAAAAATGTGAAGGCATCGTCATTAGAACAACGGATTATGGTGAAACCAATAAAGTTGTTACTCTATATACTCG
TGAATGGGGAAAAGTCGGCGTGATGGCAAGAGGGGCAAAAAAACCAAATAGCAGACTTTCTGCTATCACCCAGCTTTTTA
CATATGGATACTTCTTAATCCAAAGAGGAAGTGGATTAGGAAGTCTCCAGCAAGGTGAAATGATTTCTTCTTTACGCTCC
ATTCGCGAAGATATTTTTTTAACTGCCTATGCAAGCTATATTGTTGATTTAACTGACAAAGCAACGGCCGATGAAAATAA
ACCTAATCCTTTTCTATTTGAATTGCTAAATCAAACTTTAACTTTAATCAATGAAGGTTATGACTTAGAGGTGCTAACTA
ACATCTATGAAATGAAAATGTTAGATCTTTTCGGTTTACATCCTTGTTTAAATCAGTGCGCAGTTTGTGGAAACACAAAT
GGTCAATTTTCTTTTTCCGTCAGAGAGGGAGGGTTTATTTGCCATCAATGCGTCGTCCAGGATCCTTATGCGATTAAAAT
TTCTCCATCGACTGTAAAGCTGCTGAGGATTTTTTATTACTTTGATTTAGCAAGGCTAGGAAATATTGATGTAAAGCCGG
AAACAAAAGCGCAGCTAAAGAAAGTTATTTCCGCATATTATGATGAATATTCAGGTTTACATCTAAAAACAAAAAAATTC
CTAAATCAAATGGATAAAATGAGAGATATGTTAACTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

62.948

99.603

0.627