Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RGF10_RS07530 Genome accession   NZ_CP137761
Coordinates   1461965..1463653 (+) Length   562 a.a.
NCBI ID   WP_318508469.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1456965..1468653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS07505 - 1457216..1457449 (+) 234 WP_318508466.1 exodeoxyribonuclease VII small subunit -
  RGF10_RS07510 - 1457512..1458344 (+) 833 Protein_1445 polyprenyl synthetase family protein -
  RGF10_RS07515 dxs 1458629..1460527 (+) 1899 Protein_1446 1-deoxy-D-xylulose-5-phosphate synthase -
  RGF10_RS07520 - 1460528..1461373 (+) 846 WP_318508467.1 TlyA family RNA methyltransferase -
  RGF10_RS07525 ahrC 1461498..1461947 (+) 450 WP_318508468.1 transcriptional regulator AhrC/ArgR -
  RGF10_RS07530 recN 1461965..1463653 (+) 1689 WP_318508469.1 DNA repair protein RecN Machinery gene
  RGF10_RS07535 spoIVB 1463776..1465069 (+) 1294 Protein_1450 SpoIVB peptidase -
  RGF10_RS07540 spo0A 1465363..1466157 (+) 795 WP_318509364.1 sporulation transcription factor Spo0A Regulator
  RGF10_RS07545 - 1466367..1466840 (+) 474 WP_318508470.1 glycerophosphodiester phosphodiesterase family protein -
  RGF10_RS07550 - 1466872..1467093 (+) 222 WP_318508471.1 glycerophosphodiester phosphodiesterase family protein -
  RGF10_RS07555 - 1467107..1467352 (-) 246 WP_318508472.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63526.61 Da        Isoelectric Point: 5.2847

>NTDB_id=900568 RGF10_RS07530 WP_318508469.1 1461965..1463653(+) (recN) [Bacillus sp. T3]
MLSELSIQNFAIIDAISISFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSSEFIRHGEDKAEIEGLFLIDDSEHRIFDK
AKEFGIEIEEGMVVLRREMTKSGKSVCRVNGKLVTIAVLREFGSTLIDIHGQHEHQELMNETKHLSLLDQFSADQLTVAL
SEYQRVYKRYDETLNRLKALNENEQKMAHRLDLIQFQLDEIQNANLKINEDEELLEEKGKLANFERIFAALQSSYTALQG
EQAGLDWIGMAMGHLEDAAELDSEYKELSEHVTNSFYLLEDTVRSLRNKLEVMEYDPGRINEIEERLTEINQLKRKYGKT
IPDILEYAAKIEEEIETIQNKETHIHQLELELASLTKDLTLEAKQVSDLRKKSAKHLSKLIHRELKELYMEKTVFEVVFK
KLDHFQRNGIDFVEFFLSTNPGEPLKPLAKIASGGEMSRIMLAIKSIFSSHQGVTSIIFDEVDTGVSGRVAQAIGEKIHK
ISINSQVLCISHLPQVAAMADTHLYIAKKIKDGRTTTSVTPLSEKEKISEIGRMISGAEMTDLTKRHAEELLQLADKLKP
VT

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=900568 RGF10_RS07530 WP_318508469.1 1461965..1463653(+) (recN) [Bacillus sp. T3]
ATGCTAAGTGAATTATCGATTCAAAATTTCGCAATTATTGATGCTATATCGATTTCGTTTGAAAAGGGATTAACAGTTCT
CACCGGTGAAACTGGGGCAGGAAAATCGATTATTATCGATGCCATCCATTTACTTGCTGGTGGCAGAGGCTCATCTGAAT
TTATTCGTCATGGAGAAGATAAAGCAGAAATAGAAGGATTATTTCTTATCGATGATTCTGAGCATCGTATTTTTGATAAA
GCGAAAGAATTTGGGATTGAGATTGAAGAAGGAATGGTTGTTTTACGACGTGAAATGACGAAAAGTGGAAAAAGTGTCTG
CCGTGTAAATGGTAAACTTGTAACCATTGCTGTGTTACGGGAATTTGGTTCAACACTAATCGATATTCATGGTCAGCATG
AGCATCAAGAACTAATGAATGAAACGAAGCATTTATCTTTACTGGATCAATTTAGCGCAGATCAGTTGACGGTGGCACTT
TCAGAATATCAGCGCGTGTATAAGCGTTATGATGAGACACTTAATCGTTTAAAGGCGTTAAATGAAAATGAACAGAAAAT
GGCTCATCGCCTTGATTTAATCCAATTTCAATTAGATGAAATTCAAAATGCAAATTTAAAAATAAATGAAGATGAAGAGC
TATTAGAAGAAAAGGGAAAGCTGGCTAATTTTGAACGGATTTTTGCTGCCTTACAGTCAAGTTATACCGCGCTCCAAGGT
GAACAGGCTGGCTTGGACTGGATTGGGATGGCAATGGGTCACCTAGAGGATGCAGCGGAGTTAGATTCAGAATACAAAGA
GCTGAGTGAGCACGTTACCAACAGCTTCTATTTGTTAGAGGATACAGTTCGTTCCTTGCGAAATAAGCTTGAAGTTATGG
AATATGACCCTGGCAGAATCAATGAAATTGAGGAAAGATTAACAGAAATCAATCAACTTAAGCGAAAATATGGGAAAACA
ATTCCTGATATTCTTGAGTATGCAGCGAAAATTGAAGAGGAAATCGAAACCATCCAAAACAAAGAAACACATATCCACCA
ATTGGAGCTAGAGCTTGCTTCACTTACAAAGGATTTAACTCTAGAGGCAAAGCAGGTTAGTGACTTGCGAAAAAAATCAG
CCAAACATCTTTCAAAATTAATCCATCGTGAGCTTAAAGAGCTTTATATGGAGAAGACAGTTTTTGAAGTGGTCTTTAAA
AAATTAGATCATTTTCAACGAAACGGGATTGATTTCGTTGAGTTTTTCCTTTCGACTAATCCTGGAGAGCCGTTAAAGCC
TTTAGCGAAAATAGCTTCCGGTGGAGAAATGTCGCGTATCATGTTAGCGATTAAAAGTATTTTTTCATCCCACCAAGGTG
TAACTTCCATTATTTTTGATGAAGTTGATACAGGAGTTAGTGGCCGAGTTGCCCAGGCGATTGGTGAGAAAATCCATAAA
ATATCCATTAATTCTCAGGTATTATGTATCTCTCATCTTCCTCAGGTTGCTGCAATGGCTGATACCCATTTGTATATTGC
CAAAAAAATAAAGGACGGCAGAACAACGACATCTGTTACGCCACTGTCTGAAAAAGAAAAAATTAGTGAAATTGGCAGAA
TGATTTCTGGAGCGGAAATGACTGACTTAACAAAGAGACATGCAGAGGAATTACTGCAATTAGCAGACAAATTAAAGCCG
GTAACTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.913

100

0.633