Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RGF10_RS07540 Genome accession   NZ_CP137761
Coordinates   1465363..1466157 (+) Length   264 a.a.
NCBI ID   WP_318509364.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460363..1471157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS07520 - 1460528..1461373 (+) 846 WP_318508467.1 TlyA family RNA methyltransferase -
  RGF10_RS07525 ahrC 1461498..1461947 (+) 450 WP_318508468.1 transcriptional regulator AhrC/ArgR -
  RGF10_RS07530 recN 1461965..1463653 (+) 1689 WP_318508469.1 DNA repair protein RecN Machinery gene
  RGF10_RS07535 spoIVB 1463776..1465069 (+) 1294 Protein_1450 SpoIVB peptidase -
  RGF10_RS07540 spo0A 1465363..1466157 (+) 795 WP_318509364.1 sporulation transcription factor Spo0A Regulator
  RGF10_RS07545 - 1466367..1466840 (+) 474 WP_318508470.1 glycerophosphodiester phosphodiesterase family protein -
  RGF10_RS07550 - 1466872..1467093 (+) 222 WP_318508471.1 glycerophosphodiester phosphodiesterase family protein -
  RGF10_RS07555 - 1467107..1467352 (-) 246 WP_318508472.1 DUF2627 domain-containing protein -
  RGF10_RS07560 - 1467515..1468866 (+) 1352 Protein_1455 sigma-54 interaction domain-containing protein -
  RGF10_RS07565 buk 1469055..1470170 (+) 1116 WP_318508473.1 butyrate kinase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29423.92 Da        Isoelectric Point: 6.6108

>NTDB_id=900569 RGF10_RS07540 WP_318509364.1 1465363..1466157(+) (spo0A) [Bacillus sp. T3]
MKKIKVCVVDDNRELVGLLEEYISSQEDMEIVGVAHNGQECLDILAETTPDVLVLDIIMPHLDGLAVLEKLRETSRSTFP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLANHIRQVSGKSNSVLRKPTQSSYRPAQAEQKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMT
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=900569 RGF10_RS07540 WP_318509364.1 1465363..1466157(+) (spo0A) [Bacillus sp. T3]
GTGAAAAAGATAAAAGTGTGTGTGGTTGATGACAATAGAGAATTAGTTGGACTTCTCGAAGAGTACATATCTTCACAAGA
GGATATGGAGATTGTTGGGGTAGCTCATAATGGTCAAGAATGTCTTGATATTTTAGCGGAAACAACTCCAGACGTTCTTG
TTTTAGATATCATTATGCCGCATTTAGATGGCCTTGCGGTATTAGAAAAGTTGCGGGAAACAAGCAGAAGCACGTTTCCA
AATGTTATTATGCTCACTGCTTTTGGACAGGAAGATGTTACGAAGAAAGCAGTGGATCTTGGAGCATCCTACTTTATTTT
AAAACCATTTGATATGGAAAATTTAGCAAATCATATTCGTCAGGTTAGCGGAAAAAGCAATTCCGTTTTACGAAAACCAA
CTCAATCGAGTTATCGACCTGCACAAGCAGAACAAAAACCTAAGAACCTTGATGCAAGCATTACAAGCATTATTCATGAA
ATTGGTGTTCCAGCCCACATTAAAGGGTATATGTATTTAAGAGAAGCCATTTCAATGGTGTATAATGACATTGAACTTTT
AGGCTCTATTACAAAGGTTCTATATCCAGACATTGCGAAGAAATACAATACGACTGCTAGCCGAGTCGAGCGGGCAATCC
GCCATGCAATTGAAGTGGCTTGGAGCCGCGGCAATATCGATTCAATTTCATCTTTATTTGGCTACACTGTCAGCATGACA
AAAGCAAAGCCAACAAATTCGGAATTTATTGCGATGGTCGCGGATAAACTTAGATTAGAGCATAAAGCATCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

83.146

100

0.841