Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   RGF10_RS07250 Genome accession   NZ_CP137761
Coordinates   1414992..1415306 (+) Length   104 a.a.
NCBI ID   WP_318509357.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1409992..1420306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS07225 - 1410147..1411247 (+) 1101 WP_318508421.1 class I SAM-dependent methyltransferase -
  RGF10_RS07230 - 1411316..1411546 (-) 231 Protein_1389 DUF2626 domain-containing protein -
  RGF10_RS07235 - 1411762..1412463 (-) 702 WP_318508422.1 helix-turn-helix transcriptional regulator -
  RGF10_RS07240 comGA 1412875..1413945 (+) 1071 WP_318508423.1 competence type IV pilus ATPase ComGA Machinery gene
  RGF10_RS07245 comGB 1413938..1414966 (+) 1029 WP_318508424.1 competence type IV pilus assembly protein ComGB -
  RGF10_RS07250 comGC 1414992..1415306 (+) 315 WP_318509357.1 competence type IV pilus major pilin ComGC Machinery gene
  RGF10_RS07255 comGD 1415306..1415746 (+) 441 WP_318508425.1 competence type IV pilus minor pilin ComGD -
  RGF10_RS07260 - 1415730..1416062 (+) 333 WP_318508426.1 hypothetical protein -
  RGF10_RS07265 comGF 1416010..1416480 (+) 471 WP_318508427.1 competence type IV pilus minor pilin ComGF -
  RGF10_RS07270 comGG 1416481..1416861 (+) 381 WP_318508428.1 competence type IV pilus minor pilin ComGG -
  RGF10_RS07275 - 1416877..1417371 (+) 495 WP_318508429.1 shikimate kinase -
  RGF10_RS07280 - 1417426..1417605 (+) 180 WP_318508430.1 YqzE family protein -
  RGF10_RS07285 - 1417849..1418640 (-) 792 WP_318508431.1 YqhG family protein -
  RGF10_RS07290 - 1418618..1420306 (-) 1689 WP_318508432.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11278.10 Da        Isoelectric Point: 5.6798

>NTDB_id=900567 RGF10_RS07250 WP_318509357.1 1414992..1415306(+) (comGC) [Bacillus sp. T3]
MKNEKGFTLIEMMIVLLIISVLLIITIPNIAKHNASINSKGCEAYVKMVEAQVQAYKMDHNQYPANIEELISEGYLKSGK
TACSEGTTIVIGANGEVTKTESGS

Nucleotide


Download         Length: 315 bp        

>NTDB_id=900567 RGF10_RS07250 WP_318509357.1 1414992..1415306(+) (comGC) [Bacillus sp. T3]
ATGAAGAATGAAAAGGGATTTACTTTAATTGAAATGATGATTGTTCTATTAATTATTTCAGTTTTGTTAATTATTACAAT
ACCGAATATTGCAAAACATAATGCCAGCATTAATAGCAAGGGATGTGAGGCTTATGTGAAGATGGTTGAAGCTCAAGTTC
AGGCTTACAAAATGGATCATAATCAATACCCAGCTAATATAGAGGAGTTAATCTCCGAGGGTTATTTAAAAAGTGGTAAA
ACAGCTTGTTCAGAAGGAACTACAATTGTCATTGGTGCAAATGGGGAGGTCACAAAGACTGAAAGCGGATCCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

53.608

93.269

0.5
  comGC Staphylococcus aureus N315

53.608

93.269

0.5
  comGC Bacillus subtilis subsp. subtilis str. 168

52.632

91.346

0.481