Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RGF10_RS06795 Genome accession   NZ_CP137761
Coordinates   1329502..1329927 (+) Length   141 a.a.
NCBI ID   WP_318508320.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324502..1334927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS06760 aroE 1324741..1325574 (+) 834 WP_318508307.1 shikimate dehydrogenase -
  RGF10_RS06765 yhbY 1325574..1325864 (+) 291 WP_318508309.1 ribosome assembly RNA-binding protein YhbY -
  RGF10_RS06770 - 1325883..1326564 (+) 682 Protein_1296 nicotinate-nucleotide adenylyltransferase -
  RGF10_RS06775 yqeK 1326482..1327009 (+) 528 WP_412176716.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RGF10_RS06780 rsfS 1327014..1327370 (+) 357 WP_318508313.1 ribosome silencing factor -
  RGF10_RS06785 - 1327367..1328113 (+) 747 WP_318508315.1 class I SAM-dependent methyltransferase -
  RGF10_RS06790 comER 1328394..1329215 (-) 822 WP_318508317.1 late competence protein ComER -
  RGF10_RS06795 comEA 1329502..1329927 (+) 426 WP_318508320.1 helix-hairpin-helix domain-containing protein Machinery gene
  RGF10_RS06800 - 1330014..1330574 (+) 561 WP_318508322.1 ComE operon protein 2 -
  RGF10_RS06805 - 1330791..1331153 (+) 363 WP_318508324.1 hypothetical protein -
  RGF10_RS23780 - 1331165..1331284 (+) 120 Protein_1304 DUF4131 domain-containing protein -
  RGF10_RS06810 - 1331378..1331560 (+) 183 WP_318508326.1 ComEC/Rec2 family competence protein -
  RGF10_RS06815 - 1331571..1333103 (+) 1533 WP_318508328.1 DNA internalization-related competence protein ComEC/Rec2 -
  RGF10_RS06820 - 1333214..1333344 (-) 131 Protein_1307 YqzM family protein -
  RGF10_RS06825 holA 1333660..1334676 (+) 1017 WP_318508330.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15406.47 Da        Isoelectric Point: 4.2705

>NTDB_id=900563 RGF10_RS06795 WP_318508320.1 1329502..1329927(+) (comEA) [Bacillus sp. T3]
MIDMKGAIQKPGVYEAKKGERVIDLIERAGGFSDMADQSKVNLAMYVEDQMVIAIPQFGDTETDFVVGTSVGDQSQPDKV
NINKADETELETLPGIGPSKSAAIIEYRTTTCPFKSIEEIQSISGIGEKTFEKLKDKITID

Nucleotide


Download         Length: 426 bp        

>NTDB_id=900563 RGF10_RS06795 WP_318508320.1 1329502..1329927(+) (comEA) [Bacillus sp. T3]
ATGATCGATATGAAAGGAGCGATTCAAAAGCCAGGGGTTTATGAAGCAAAGAAAGGTGAAAGGGTGATTGATTTAATCGA
AAGAGCAGGGGGCTTTTCCGACATGGCAGATCAATCGAAGGTTAATTTAGCCATGTACGTCGAGGATCAAATGGTCATCG
CTATCCCTCAATTCGGTGATACTGAGACTGATTTCGTTGTTGGTACAAGTGTAGGTGATCAATCGCAGCCTGATAAAGTG
AATATTAATAAAGCAGATGAGACTGAGCTTGAAACTCTCCCAGGTATTGGTCCTTCAAAATCTGCCGCTATTATTGAATA
TCGAACAACCACCTGTCCTTTTAAATCCATTGAAGAAATTCAATCAATTAGTGGAATTGGAGAAAAAACATTTGAAAAAT
TAAAGGATAAAATAACCATTGACTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(2-45)

Helix-hairpin-helix motif (HHH_3)

(78-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.