Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R5H38_RS07020 Genome accession   NZ_CP137602
Coordinates   1377402..1379165 (-) Length   587 a.a.
NCBI ID   WP_277844022.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372402..1384165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS06995 - 1372765..1373466 (-) 702 WP_277844012.1 ABC transporter ATP-binding protein -
  R5H38_RS07000 tpx 1373919..1374413 (-) 495 WP_172019144.1 thiol peroxidase -
  R5H38_RS07005 - 1374720..1375946 (-) 1227 WP_277844016.1 sensor histidine kinase -
  R5H38_RS07010 - 1375939..1376631 (-) 693 WP_277844018.1 response regulator transcription factor -
  R5H38_RS07015 - 1376632..1377252 (-) 621 WP_277844020.1 GTP pyrophosphokinase family protein -
  R5H38_RS07020 rcrQ 1377402..1379165 (-) 1764 WP_277844022.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS07025 rcrP 1379155..1380921 (-) 1767 WP_277844024.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS07030 rcrR 1380924..1381361 (-) 438 WP_277844026.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  R5H38_RS10310 - 1381631..1382523 (-) 893 Protein_1354 LysR family transcriptional regulator -
  R5H38_RS07045 - 1382648..1383619 (+) 972 WP_277844032.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64475.95 Da        Isoelectric Point: 4.8736

>NTDB_id=899241 R5H38_RS07020 WP_277844022.1 1377402..1379165(-) (rcrQ) [Streptococcus parasuis strain 221006]
MANKQESSRAQLAPYIKGFKIPFVLAILGALISSIITVIGPDKLSEITDLVTEGLMTGIDTEKVQSIATGLAILYLIGAL
VSYGQSFIVATIVQKFSNRLRTGIAEKINRLPLRYFDGHSQGDTLSRVTNDVDTVSQSLNQGLGTIVSSSLLLIASVYMM
FTTNVTLATTTVLSVVGGFILSILIMAKSQPYFKKQQTNLANINGFIEETYTGHNVITSYNASKESISTFEKLNQQLYSS
MWKSQFFSGIMMPMMIFIGNFGYVMVSVVGAMKALDGDITIGTIVAFMTYVRIFSQPLSQLAQAITQMQSASAAIGRIME
FLGEDEMENESHKVQQLDQVHGDVTFDQVQFGYNSDKIIIHDFSAHAKKGQKVAIVGPTGAGKTTIVNLLMKFYDINKGS
IQIDGVNIKDMSREEVHNAFSMVLQDTWLFEGTVKENLVYNQAGISDQQVIAAAKAVGVHHFIQTLPDGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELLQQAMDKLMEGRTSFVIAHRLSTIKNADLILVMRDGNIIEQGN
HDQLMEQAGFYADLYNSQFVEDEEEAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=899241 R5H38_RS07020 WP_277844022.1 1377402..1379165(-) (rcrQ) [Streptococcus parasuis strain 221006]
ATGGCAAATAAGCAAGAATCATCTAGAGCACAGCTAGCTCCCTATATCAAAGGTTTTAAAATTCCCTTTGTTTTGGCCAT
TCTAGGCGCTTTGATCTCTAGTATCATTACAGTTATCGGTCCAGATAAATTAAGTGAAATTACAGATCTTGTGACAGAAG
GCTTAATGACAGGGATTGATACAGAAAAAGTACAATCAATTGCCACAGGCTTGGCTATTTTGTACCTCATCGGTGCCCTT
GTTTCCTATGGACAAAGTTTTATCGTAGCAACGATTGTACAAAAATTCTCTAATCGCTTGAGAACAGGGATTGCAGAGAA
AATCAACCGTCTTCCCCTTCGGTATTTTGACGGACACTCCCAAGGGGACACACTTTCACGTGTGACCAATGATGTGGATA
CAGTCAGTCAATCGCTCAACCAAGGTCTTGGAACAATCGTTAGCTCAAGCCTACTCTTGATTGCATCCGTTTATATGATG
TTCACAACCAATGTAACCTTGGCGACAACAACTGTCCTTTCTGTTGTAGGTGGTTTTATTCTGAGTATCTTGATTATGGC
CAAGTCTCAACCATATTTCAAAAAACAACAAACCAACTTGGCCAATATCAATGGCTTTATTGAAGAAACCTACACAGGCC
ACAATGTGATTACCAGCTACAATGCCAGCAAAGAATCCATCTCCACTTTTGAAAAACTCAACCAACAATTGTATTCAAGT
ATGTGGAAATCACAATTCTTTTCAGGGATTATGATGCCAATGATGATCTTTATCGGGAACTTTGGTTATGTCATGGTCAG
TGTGGTCGGAGCCATGAAAGCCTTGGATGGGGATATTACAATCGGTACCATCGTTGCCTTTATGACCTATGTCCGTATCT
TCTCCCAACCCTTGTCACAACTAGCTCAAGCCATTACCCAAATGCAATCGGCTTCAGCTGCAATCGGTCGTATCATGGAA
TTCTTAGGGGAAGACGAGATGGAAAATGAAAGTCACAAGGTTCAACAATTGGATCAAGTGCATGGTGATGTGACATTCGA
TCAAGTCCAATTTGGTTACAATTCAGATAAGATTATTATTCACGACTTTTCTGCTCATGCGAAAAAGGGGCAAAAAGTGG
CGATTGTGGGTCCTACAGGAGCTGGTAAAACAACCATTGTCAACCTTCTGATGAAATTCTATGATATTAACAAAGGCTCT
ATTCAGATTGATGGTGTTAACATCAAGGATATGAGTCGTGAAGAAGTTCACAATGCCTTTTCAATGGTCTTGCAGGATAC
ATGGCTCTTTGAAGGAACGGTCAAGGAAAATCTTGTCTATAATCAAGCAGGAATTTCCGATCAGCAGGTTATTGCTGCAG
CGAAGGCTGTTGGTGTTCACCACTTTATTCAGACCTTGCCAGATGGTTACGATACAGTGCTTGATGACTCTGTGACGCTC
TCAGTTGGTCAGAAACAATTGTTGACCATTGCGCGTGCGCTCTTAAAAGATGCTCCGCTCCTCATTTTGGATGAAGCAAC
CTCATCTGTGGATACTCGGACAGAGGAATTGTTGCAACAAGCGATGGATAAACTAATGGAAGGACGCACATCCTTTGTCA
TTGCCCATCGTCTGTCTACCATTAAAAATGCAGATCTGATTCTGGTGATGCGAGATGGTAATATCATTGAACAAGGAAAC
CACGATCAACTCATGGAACAGGCTGGTTTCTATGCGGACCTCTACAATTCCCAATTTGTGGAAGACGAAGAAGAAGCAAG
CTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.649

99.148

0.71