Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   R5H38_RS07030 Genome accession   NZ_CP137602
Coordinates   1380924..1381361 (-) Length   145 a.a.
NCBI ID   WP_277844026.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375924..1386361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS07010 - 1375939..1376631 (-) 693 WP_277844018.1 response regulator transcription factor -
  R5H38_RS07015 - 1376632..1377252 (-) 621 WP_277844020.1 GTP pyrophosphokinase family protein -
  R5H38_RS07020 rcrQ 1377402..1379165 (-) 1764 WP_277844022.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS07025 rcrP 1379155..1380921 (-) 1767 WP_277844024.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS07030 rcrR 1380924..1381361 (-) 438 WP_277844026.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  R5H38_RS10310 - 1381631..1382523 (-) 893 Protein_1354 LysR family transcriptional regulator -
  R5H38_RS07045 - 1382648..1383619 (+) 972 WP_277844032.1 alpha/beta hydrolase -
  R5H38_RS07050 - 1383637..1384203 (+) 567 WP_277844034.1 DapH/DapD/GlmU-related protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16753.40 Da        Isoelectric Point: 8.0784

>NTDB_id=899243 R5H38_RS07030 WP_277844026.1 1380924..1381361(-) (rcrR) [Streptococcus parasuis strain 221006]
MGKEPMSRIKLLVSRVEVYLRQMECKHDITHLSGPQGFTTMYLYKHQGQEVFIKDIERELQISKSVASNLIHRMEKNGFI
SVIPSQVDKRYKQLVLTEKGLEKAAVLGNFFEEVRGQLLDGVDKDDLDAVQRVINQIHINLDKKE

Nucleotide


Download         Length: 438 bp        

>NTDB_id=899243 R5H38_RS07030 WP_277844026.1 1380924..1381361(-) (rcrR) [Streptococcus parasuis strain 221006]
ATGGGAAAAGAACCAATGTCAAGGATTAAACTCTTGGTTAGTCGTGTTGAAGTCTATCTGAGGCAAATGGAATGCAAGCA
TGACATTACCCACCTAAGTGGACCACAGGGCTTTACTACCATGTATCTCTACAAACACCAAGGCCAGGAAGTATTCATTA
AGGATATTGAGAGAGAACTGCAAATTTCAAAATCTGTTGCCTCCAATCTGATTCACCGAATGGAGAAAAATGGCTTTATT
TCAGTTATCCCCTCACAAGTTGACAAGCGATACAAACAGTTGGTACTGACAGAAAAGGGGCTCGAAAAGGCTGCAGTCTT
AGGTAACTTTTTTGAGGAAGTGCGCGGTCAATTGCTGGACGGGGTGGATAAAGATGACTTAGATGCTGTCCAGCGTGTGA
TCAATCAAATTCATATTAATTTAGATAAGAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(34-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

53.147

98.621

0.524