Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R5H38_RS07025 Genome accession   NZ_CP137602
Coordinates   1379155..1380921 (-) Length   588 a.a.
NCBI ID   WP_277844024.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374155..1385921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS07005 - 1374720..1375946 (-) 1227 WP_277844016.1 sensor histidine kinase -
  R5H38_RS07010 - 1375939..1376631 (-) 693 WP_277844018.1 response regulator transcription factor -
  R5H38_RS07015 - 1376632..1377252 (-) 621 WP_277844020.1 GTP pyrophosphokinase family protein -
  R5H38_RS07020 rcrQ 1377402..1379165 (-) 1764 WP_277844022.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS07025 rcrP 1379155..1380921 (-) 1767 WP_277844024.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS07030 rcrR 1380924..1381361 (-) 438 WP_277844026.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  R5H38_RS10310 - 1381631..1382523 (-) 893 Protein_1354 LysR family transcriptional regulator -
  R5H38_RS07045 - 1382648..1383619 (+) 972 WP_277844032.1 alpha/beta hydrolase -
  R5H38_RS07050 - 1383637..1384203 (+) 567 WP_277844034.1 DapH/DapD/GlmU-related protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65086.54 Da        Isoelectric Point: 6.8641

>NTDB_id=899242 R5H38_RS07025 WP_277844024.1 1379155..1380921(-) (rcrP) [Streptococcus parasuis strain 221006]
MFQLLKKLTVKELLFILLSVGLVAFGVWLDLEIPSYTSEITTLLQESGTTASDIMDPGWKMIGLSLLSFATSATVGFLGA
RVAASFTTRLRSEVYHQVMDYSQAEIKKFSIPSLLTRTTNDLTQLQILITMGLQVVTKGPIMAVWAMTKIAGKNGQWTWA
VVVAVVVLIAMLSILLFFAFPKQRVVQKLTDKLNSITREILTGIRVVRAYNAEEYQDAKFSQANEELTKLNLFVNRLMGL
MNPVMTLISSGLTLSVYWIGAGLINEASMEDKLPLFSDMIVFSSYGMQVVIGFMLMTIVFMILPRALVSANRINEVLALS
SSIQYPAQTGEVTEEPDHIRFDDVSFRYSKHSEAVIEHVSFSAKKGETIAFIGSTGSGKSTLINLIPRFYDVTQGNISID
GINVKHYAQEELNKKVVTIPQKAVLFSGTIRSNLVMGDSFASPLSDEAIWEALDLAQAKSFVEAKAKGLDEEVAQGGTNF
SGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRSELNKRTKDVTKLIVAQRISTIMDADHILVLDQGKVVGQGT
HKELLATNQVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=899242 R5H38_RS07025 WP_277844024.1 1379155..1380921(-) (rcrP) [Streptococcus parasuis strain 221006]
ATGTTTCAACTATTAAAAAAATTAACTGTAAAAGAGTTACTATTTATCCTCTTGAGCGTAGGGTTGGTGGCTTTTGGAGT
TTGGCTTGATTTAGAAATCCCAAGTTATACTTCGGAAATAACCACCCTCTTGCAAGAGTCAGGGACTACAGCCAGTGATA
TCATGGATCCAGGTTGGAAGATGATTGGCCTATCCCTTTTAAGTTTCGCGACTTCCGCAACCGTTGGTTTTTTAGGTGCG
CGTGTAGCAGCGAGCTTTACCACTCGTTTGCGTTCGGAGGTCTACCATCAAGTCATGGATTATTCTCAAGCAGAGATTAA
GAAATTCTCAATTCCAAGCTTATTGACCAGAACGACTAATGACCTGACTCAATTACAAATTTTAATCACCATGGGCTTGC
AAGTGGTTACCAAAGGACCCATTATGGCTGTTTGGGCAATGACTAAAATTGCAGGCAAGAATGGTCAATGGACATGGGCA
GTTGTAGTGGCAGTGGTGGTACTGATTGCCATGCTTTCAATACTCTTATTCTTTGCCTTTCCAAAACAACGGGTAGTACA
AAAGTTGACTGATAAACTCAACTCCATTACCCGCGAAATCTTGACAGGTATTCGTGTCGTCCGTGCCTATAACGCAGAAG
AGTATCAAGATGCTAAATTTTCTCAAGCCAATGAAGAGTTGACCAAGCTAAACCTCTTTGTCAATCGTCTGATGGGACTG
ATGAACCCTGTGATGACCTTGATATCATCAGGTTTGACCCTCTCTGTTTATTGGATTGGTGCAGGGTTGATTAATGAAGC
GAGTATGGAAGACAAACTACCACTTTTTAGTGATATGATTGTTTTCTCATCTTATGGTATGCAAGTTGTCATCGGCTTTA
TGCTCATGACCATCGTCTTTATGATTTTACCGCGGGCTCTTGTATCTGCAAACCGTATTAATGAAGTATTGGCGCTATCA
TCATCTATTCAATACCCTGCTCAGACAGGGGAAGTGACAGAAGAACCAGACCACATTCGCTTTGATGATGTCTCCTTCCG
TTATAGCAAACATTCAGAAGCAGTGATTGAACATGTTAGCTTTTCAGCTAAAAAGGGAGAAACGATTGCCTTTATTGGTT
CTACAGGTTCTGGTAAATCAACCCTTATTAACTTGATTCCACGTTTCTATGATGTGACTCAAGGAAATATCAGCATCGAT
GGTATCAATGTCAAACACTATGCGCAAGAAGAACTCAATAAAAAAGTGGTTACCATTCCACAGAAAGCGGTACTCTTTAG
TGGAACCATCCGTTCTAATCTTGTAATGGGTGATAGTTTTGCCAGTCCATTATCTGATGAAGCTATCTGGGAAGCCTTGG
ATTTGGCTCAGGCCAAGTCATTTGTAGAAGCAAAGGCAAAAGGATTGGATGAAGAAGTGGCTCAAGGTGGCACTAACTTC
TCTGGAGGTCAACGCCAACGGTTAGCGATTGCCCGAGCTCTTGCAAGGAAGCCAGAAATCTTGATTTTCGATGATTCCTT
CTCTGCTTTGGACTACAAAACTGACCGAATCCTGCGTTCTGAGTTGAACAAGCGTACGAAAGATGTGACAAAATTGATTG
TTGCGCAACGTATTTCTACCATCATGGATGCCGATCATATCTTGGTCTTGGATCAAGGTAAAGTAGTTGGTCAAGGAACG
CACAAAGAACTATTGGCAACCAATCAAGTTTATCAAGAAATTGCATATTCACAATTGAGCAAGGAGGAACTAGAAAATGG
CAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(18-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

69.667

100

0.711