NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	R5H38_RS06640	Genome accession	NZ_CP137602
Coordinates	1299041..1299652 (-)	Length	203 a.a.
NCBI ID	WP_277837118.1	Uniprot ID	-
Organism	Streptococcus parasuis strain 221006
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1294041..1304652

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5H38_RS06615	-	1294421..1295185 (-)	765	WP_024391941.1	ABC transporter ATP-binding protein	-
R5H38_RS06620	-	1295185..1296132 (-)	948	WP_217374001.1	branched-chain amino acid ABC transporter permease	-
R5H38_RS06625	-	1296135..1297022 (-)	888	WP_318150421.1	branched-chain amino acid ABC transporter permease	-
R5H38_RS06630	-	1297303..1298472 (-)	1170	WP_277837084.1	ABC transporter substrate-binding protein	-
R5H38_RS06635	-	1298637..1298924 (-)	288	WP_217374004.1	DUF2129 domain-containing protein	-
R5H38_RS06640	clpP	1299041..1299652 (-)	612	WP_277837118.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R5H38_RS06645	upp	1299753..1300382 (-)	630	WP_024391947.1	uracil phosphoribosyltransferase	-
R5H38_RS06650	-	1300462..1302078 (-)	1617	WP_277837085.1	glycoside hydrolase family 13 protein	-
R5H38_RS06655	gtfA	1302148..1303596 (-)	1449	WP_318150422.1	sucrose phosphorylase	-
R5H38_RS06660	-	1303665..1304495 (-)	831	WP_171989738.1	carbohydrate ABC transporter permease	-

Sequence

Protein

Download Length: 203 a.a. Molecular weight: 22421.81 Da Isoelectric Point: 7.3124

                                >NTDB_id=899240 R5H38_RS06640 WP_277837118.1 1299041..1299652(-) (clpP) [Streptococcus parasuis strain 221006]

MSKRSKFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL

AIVDTMNFIKADVQTIVMGTAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGGGTQQTDMAIAAEHLLNTRNKLEKI

LAENSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMYNTKTK

Nucleotide

Download Length: 612 bp

                                >NTDB_id=899240 R5H38_RS06640 WP_277837118.1 1299041..1299652(-) (clpP) [Streptococcus parasuis strain 221006]

ATCTCGAAAAGGAGTAAATTTATGATTCCAGTAGTTATTGAACAAACTAGTCGCGGTGAGCGCTCGTATGATATTTATTC

ACGTTTGCTGAAAGACCGCATCATTATGTTGACAGGTCCGGTTGAGGACAATATGGCCAATTCGATTATTGCCCAATTGC

TTTTCCTAGATGCACAAGATCCAACAAAAGATATTTATCTCTATGTAAATACACCAGGGGGTTCTGTTTCTGCAGGTCTT

GCCATCGTGGATACAATGAACTTCATTAAAGCAGACGTACAGACAATTGTAATGGGTACTGCAGCAAGTATGGGAACAAT

TATTGCTTCAAGTGGTACAAAAGGCAAACGTTTCATGCTTCCTAATGCAGAATACCTGATTCACCAACCAATGGGAGGCA

CTGGTGGTGGTACTCAGCAAACTGACATGGCAATTGCAGCAGAACACCTCTTAAATACTCGTAACAAGTTAGAAAAAATC

TTGGCGGAAAATTCTGGTAAGACAGTCAAACAAATCCATAAGGATGCAGAACGTGACTATTGGATGTCTGCTGAAGAAAC

CTTGGCATACGGCTTTATCGACCAAATTATGTATAATACAAAGACTAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-198)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	91.837	96.552	0.887
clpP	Streptococcus pyogenes MGAS315	91.837	96.552	0.887
clpP	Streptococcus mutans UA159	86.765	100	0.872
clpP	Streptococcus thermophilus LMD-9	87.755	96.552	0.847
clpP	Streptococcus thermophilus LMG 18311	87.755	96.552	0.847
clpP	Streptococcus pneumoniae R6	89.583	94.581	0.847
clpP	Streptococcus pneumoniae Rx1	89.583	94.581	0.847
clpP	Streptococcus pneumoniae D39	89.583	94.581	0.847
clpP	Streptococcus pneumoniae TIGR4	89.583	94.581	0.847
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	83.756	97.044	0.813
clpP	Lactococcus lactis subsp. cremoris KW2	83.249	97.044	0.808
clpP	Bacillus subtilis subsp. subtilis str. 168	58.163	96.552	0.562
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.421	93.596	0.547

Detailed information NTG0899240