Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   R5H38_RS06265 Genome accession   NZ_CP137602
Coordinates   1223164..1224966 (-) Length   600 a.a.
NCBI ID   WP_277837031.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218164..1229966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS06240 - 1219526..1220014 (-) 489 WP_130554263.1 LURP-one-related/scramblase family protein -
  R5H38_RS06245 prsA 1220282..1221298 (-) 1017 WP_318150391.1 peptidylprolyl isomerase PrsA -
  R5H38_RS06250 - 1221361..1222080 (-) 720 WP_217373923.1 O-methyltransferase -
  R5H38_RS06255 - 1222155..1222703 (-) 549 WP_318150392.1 DUF6630 family protein -
  R5H38_RS06260 - 1222716..1223162 (-) 447 WP_318150393.1 hypothetical protein -
  R5H38_RS06265 pepF 1223164..1224966 (-) 1803 WP_277837031.1 oligoendopeptidase F Regulator
  R5H38_RS06270 coiA 1225039..1225977 (-) 939 WP_318150394.1 competence protein CoiA Machinery gene
  R5H38_RS06275 metG 1226041..1228044 (-) 2004 WP_318150395.1 methionine--tRNA ligase -
  R5H38_RS06280 - 1228210..1228803 (+) 594 WP_318150396.1 DUF1361 domain-containing protein -
  R5H38_RS06285 - 1228847..1229191 (-) 345 WP_318150397.1 hypothetical protein -
  R5H38_RS06290 - 1229857..1229958 (-) 102 WP_318150398.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69254.39 Da        Isoelectric Point: 4.5123

>NTDB_id=899238 R5H38_RS06265 WP_277837031.1 1223164..1224966(-) (pepF) [Streptococcus parasuis strain 221006]
MSKQRHEIEEKYQWDLTTIFPTDEAWEEELASLQAETETAKDFAGHLLDSAKSLLDISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSAFSQAFAFYEPEFMAITEEQLKAFMDEEPTLVQYSHQFEKLLAAKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAYENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEELVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=899238 R5H38_RS06265 WP_277837031.1 1223164..1224966(-) (pepF) [Streptococcus parasuis strain 221006]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGAAGAATTAGCTTCATTACAAGCAGAAACTGAAACGGCAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGATATTAGTGAGACACAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAT
CAAGATACTCGTGAAGGTAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGCCTTTTCACAGGCTTTTGC
CTTCTATGAACCTGAATTTATGGCTATTACTGAGGAACAGTTGAAAGCATTCATGGATGAAGAGCCAACTTTGGTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGACCATGTTTTGTCACAAGAAATTGAAGAAGTATTGGCTGCTACG
AGTGAGATTTTCGAATCTCCAGCTGAAACTTTCTCTGTTTTGGATAATGCAAGTATCCTATTCCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCTATGTACGGAACCTATGAGCAGTTTCAGCATACCTACGCTAAGACTCTGCAGTCAAACGTTAAGGTCAAT
AACCTGAAAGCACGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCTCTTGCAGCCAATTTTATTCCAGAATCTGTCTA
CGATACATTAGTTGAGGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATTTGCGAAAGAAACTCTTGGGTA
TTGACGACTTGAAGATGTACGATATGTACACGCCATTGTCAGATTTTAGCACCAAGATTTCCTATGAAGATGCACTCAAA
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTAAAAGAAGCCTATGAGAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACAAACGCCTTCATGCTTCTCAACT
GGCAAGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTAGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTATTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAGGCTATCTATAAGGCAGACCAAGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTATACGGTCAGACTAACGAAAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTCGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATCCCCTC
AACGTCATTGCAAAAGCTGGTGTAGATATGACCAAGGAAGACTATCTTAACGATGCTTTCAAAGTTTTTGAAGCACGCCT
AACTGAATTGGAAGAGCTTGTTGAAAAAGGGGTACATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.167

100

0.702