Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R5H38_RS06270 Genome accession   NZ_CP137602
Coordinates   1225039..1225977 (-) Length   312 a.a.
NCBI ID   WP_318150394.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1220039..1230977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS06245 prsA 1220282..1221298 (-) 1017 WP_318150391.1 peptidylprolyl isomerase PrsA -
  R5H38_RS06250 - 1221361..1222080 (-) 720 WP_217373923.1 O-methyltransferase -
  R5H38_RS06255 - 1222155..1222703 (-) 549 WP_318150392.1 DUF6630 family protein -
  R5H38_RS06260 - 1222716..1223162 (-) 447 WP_318150393.1 hypothetical protein -
  R5H38_RS06265 pepF 1223164..1224966 (-) 1803 WP_277837031.1 oligoendopeptidase F Regulator
  R5H38_RS06270 coiA 1225039..1225977 (-) 939 WP_318150394.1 competence protein CoiA Machinery gene
  R5H38_RS06275 metG 1226041..1228044 (-) 2004 WP_318150395.1 methionine--tRNA ligase -
  R5H38_RS06280 - 1228210..1228803 (+) 594 WP_318150396.1 DUF1361 domain-containing protein -
  R5H38_RS06285 - 1228847..1229191 (-) 345 WP_318150397.1 hypothetical protein -
  R5H38_RS06290 - 1229857..1229958 (-) 102 WP_318150398.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36567.34 Da        Isoelectric Point: 8.2160

>NTDB_id=899239 R5H38_RS06270 WP_318150394.1 1225039..1225977(-) (coiA) [Streptococcus parasuis strain 221006]
MLIALDEDGQVFNVLENPAPQGRYFCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESTQHLSLKSCLYRWLVNTER
VELEKCLQELSQVADLFVNDCLVMEVQCSSLPISRLQLRTQAYREAGYLVLWLLGKDLWLKERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRQPFAKQILSSMTCPMDEDLPRYIAQQLYYKSPKWL
ALQAEAYGRGENLLTKTVFDWFPHIRLPRSAIGFAQIQVNLNSVYQDFDGYYARVKDKRNQVLYPPVVYLKR

Nucleotide


Download         Length: 939 bp        

>NTDB_id=899239 R5H38_RS06270 WP_318150394.1 1225039..1225977(-) (coiA) [Streptococcus parasuis strain 221006]
ATGTTAATTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCACAAGGTCGATATTTTTGTCC
AGGTTGTGGAGGCCTAGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCACGTCACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCCACCCAACATCTGTCCCTAAAGTCTTGTCTGTACAGGTGGTTAGTCAATACCGAACGA
GTTGAACTTGAAAAATGCCTGCAGGAGTTAAGTCAGGTAGCGGACTTATTTGTCAATGATTGTTTAGTCATGGAAGTCCA
ATGTTCCAGTCTGCCGATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCGTGAGGCTGGTTATCTGGTTCTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCTCTTTTAGTATGAATATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGGCTCCGTTACCTTATTCATGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCAGCCCTTTGCCAAGCAAATCCTAT
CTAGCATGACTTGTCCTATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAAATGGCTC
GCTCTGCAAGCGGAGGCTTATGGACGTGGAGAAAATCTACTGACCAAGACAGTATTTGACTGGTTTCCCCACATCCGACT
GCCCCGCTCTGCCATTGGCTTTGCCCAGATACAGGTAAATTTGAACTCGGTTTACCAGGACTTTGATGGCTATTATGCTA
GGGTTAAAGACAAGAGAAATCAAGTCCTTTATCCACCGGTTGTTTACCTTAAAAGATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.903

99.359

0.526
  coiA Streptococcus pneumoniae TIGR4

50.968

99.359

0.506
  coiA Streptococcus pneumoniae Rx1

50.968

99.359

0.506
  coiA Streptococcus pneumoniae D39

50.968

99.359

0.506
  coiA Streptococcus pneumoniae R6

50.968

99.359

0.506
  coiA Lactococcus lactis subsp. cremoris KW2

42.547

100

0.439