NTDB

Overview

Name	comYC	Type	Machinery gene
Locus tag	RDV49_RS01240	Genome accession	NZ_CP133988
Coordinates	261765..262082 (-)	Length	105 a.a.
NCBI ID	WP_003009763.1	Uniprot ID	A0AAE8DJZ6
Organism	Streptococcus parasanguinis strain B-1756
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 256765..267082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV49_RS01205 (RDV49_01205)	-	257219..257950 (-)	732	WP_037608245.1	CPBP family intramembrane glutamic endopeptidase	-
RDV49_RS01210 (RDV49_01210)	-	258023..259216 (-)	1194	WP_003009777.1	acetate kinase	-
RDV49_RS01215 (RDV49_01215)	comYH	259268..260221 (-)	954	WP_003009772.1	class I SAM-dependent methyltransferase	Machinery gene
RDV49_RS01220 (RDV49_01220)	comGG	260252..260689 (-)	438	WP_003009770.1	competence type IV pilus minor pilin ComGG	-
RDV49_RS01225 (RDV49_01225)	comGF/cglF	260676..261128 (-)	453	WP_003009767.1	competence type IV pilus minor pilin ComGF	Machinery gene
RDV49_RS01230 (RDV49_01230)	comGE	261118..261405 (-)	288	WP_003004353.1	competence type IV pilus minor pilin ComGE	-
RDV49_RS01235 (RDV49_01235)	comYD	261371..261775 (-)	405	WP_003004513.1	competence type IV pilus minor pilin ComGD	Machinery gene
RDV49_RS01240 (RDV49_01240)	comYC	261765..262082 (-)	318	WP_003009763.1	competence type IV pilus major pilin ComGC	Machinery gene
RDV49_RS01245 (RDV49_01245)	comYB	262079..263110 (-)	1032	WP_182448484.1	competence type IV pilus assembly protein ComGB	Machinery gene
RDV49_RS01250 (RDV49_01250)	comYA	263043..263984 (-)	942	WP_003009757.1	competence type IV pilus ATPase ComGA	Machinery gene
RDV49_RS01255 (RDV49_01255)	-	264072..264461 (-)	390	WP_037608454.1	DUF1033 family protein	-
RDV49_RS01260 (RDV49_01260)	-	264671..265774 (-)	1104	WP_003009752.1	glycosyl hydrolase family 8	-

Sequence

Protein

Download Length: 105 a.a. Molecular weight: 11659.54 Da Isoelectric Point: 9.2975

                                >NTDB_id=878147 RDV49_RS01240 WP_003009763.1 261765..262082(-) (comYC) [Streptococcus parasanguinis strain B-1756]

MKKLKTYQVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVKETGNAAVVKVVESQAELYELNHTNDQATLAKLIADGN

ITNKQAESYRAYYAKNSGETRAVAD

Nucleotide

Download Length: 318 bp

                                >NTDB_id=878147 RDV49_RS01240 WP_003009763.1 261765..262082(-) (comYC) [Streptococcus parasanguinis strain B-1756]

ATGAAAAAATTAAAAACCTATCAGGTTAAAGCCTTTACACTTATTGAAATGTTGGTGGTCTTATTGATCATCAGTGTGCT

TTTATTGCTCTTTGTGCCGAATTTGACCAAGCAAAAAGACTCCGTGAAGGAGACAGGAAATGCAGCGGTTGTGAAGGTGG

TCGAAAGCCAGGCTGAATTGTACGAGCTCAATCATACCAATGACCAAGCTACTCTAGCAAAGCTGATTGCTGATGGAAAT

ATTACCAACAAACAAGCAGAGTCCTACCGTGCCTATTATGCGAAAAATAGTGGAGAAACTCGTGCGGTTGCAGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYC	Streptococcus gordonii str. Challis substr. CH1	76.19	100	0.762
comYC	Streptococcus mutans UA159	73.333	100	0.733
comYC	Streptococcus mutans UA140	73.333	100	0.733
comGC/cglC	Streptococcus mitis SK321	66.972	100	0.695
comGC/cglC	Streptococcus mitis NCTC 12261	65.455	100	0.686
comGC/cglC	Streptococcus pneumoniae Rx1	64.22	100	0.667
comGC/cglC	Streptococcus pneumoniae R6	64.22	100	0.667
comGC/cglC	Streptococcus pneumoniae TIGR4	64.22	100	0.667
comGC/cglC	Streptococcus pneumoniae D39	64.22	100	0.667
comGC	Lactococcus lactis subsp. cremoris KW2	58.654	99.048	0.581
comYC	Streptococcus suis isolate S10	66.292	84.762	0.562
comGC	Staphylococcus aureus N315	44.898	93.333	0.419
comGC	Staphylococcus aureus MW2	44.898	93.333	0.419

Detailed information NTG0878147