Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   Q9Q79_RS16065 Genome accession   NZ_CP133161
Coordinates   3491906..3492328 (-) Length   140 a.a.
NCBI ID   WP_099527265.1    Uniprot ID   -
Organism   Stenotrophomonas sp. a6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3486906..3497328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9Q79_RS16050 pilR 3487905..3489278 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  Q9Q79_RS16055 pilB 3489404..3491137 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9Q79_RS16060 - 3491360..3491773 (-) 414 WP_099527264.1 pilin -
  Q9Q79_RS16065 pilA/pilAI 3491906..3492328 (-) 423 WP_099527265.1 pilin Machinery gene
  Q9Q79_RS16070 pilC 3492681..3493940 (+) 1260 WP_088430641.1 type II secretion system F family protein Machinery gene
  Q9Q79_RS16075 - 3493948..3494811 (+) 864 WP_005410800.1 A24 family peptidase -
  Q9Q79_RS16080 coaE 3494823..3495434 (+) 612 WP_049452340.1 dephospho-CoA kinase -
  Q9Q79_RS16085 - 3495627..3496013 (-) 387 WP_005410802.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 14418.70 Da        Isoelectric Point: 8.0997

>NTDB_id=872174 Q9Q79_RS16065 WP_099527265.1 3491906..3492328(-) (pilA/pilAI) [Stenotrophomonas sp. a6]
MKNQKGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQATAGLAEITPGKTQAEVLLNEGKDYADAASIGLTATTERCGI
AGKGVSTTGIANIECTLKGNSKVATKKVTLERDGAGAWKCTTTLDAKYRPAGCGDAPAAP

Nucleotide


Download         Length: 423 bp        

>NTDB_id=872174 Q9Q79_RS16065 WP_099527265.1 3491906..3492328(-) (pilA/pilAI) [Stenotrophomonas sp. a6]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTACCAGGACTACGTGGCCAAGTCGCAGGCTACCGCTGGCCTCGCCGAAATCACCCCGGGCAAGACCCAGGCCG
AAGTCCTGCTGAATGAAGGCAAGGACTACGCCGACGCCGCTAGTATCGGTCTGACCGCCACCACCGAGCGCTGCGGTATT
GCTGGTAAGGGCGTCAGCACCACTGGTATTGCGAACATCGAATGCACACTGAAGGGCAATTCCAAGGTTGCCACCAAGAA
GGTGACTCTGGAGCGTGACGGCGCTGGTGCTTGGAAGTGCACCACCACGCTGGATGCGAAGTACCGTCCGGCCGGTTGCG
GCGATGCTCCGGCGGCCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

53.676

97.143

0.521
  pilA Acinetobacter baumannii strain A118

50

97.143

0.486
  pilA Pseudomonas aeruginosa PAK

44.595

100

0.471
  comP Acinetobacter baylyi ADP1

40.397

100

0.436
  pilA Vibrio cholerae C6706

43.571

100

0.436
  pilA Vibrio cholerae strain A1552

43.571

100

0.436
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

43.571

100

0.436
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.963

96.429

0.414
  pilE Neisseria gonorrhoeae strain FA1090

34.375

100

0.393
  pilA2 Legionella pneumophila str. Paris

40.909

94.286

0.386
  pilE Neisseria gonorrhoeae MS11

33.962

100

0.386
  pilA Ralstonia pseudosolanacearum GMI1000

33.333

100

0.386
  pilA2 Legionella pneumophila strain ERS1305867

40.152

94.286

0.379
  pilA Haemophilus influenzae 86-028NP

36.111

100

0.371