Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   RBI20_RS02735 Genome accession   NZ_CP133046
Coordinates   580831..581958 (-) Length   375 a.a.
NCBI ID   WP_308679887.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 11066     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575831..586958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI20_RS02715 (RBI20_02715) - 576259..577248 (+) 990 WP_065183725.1 fumarylacetoacetate hydrolase family protein -
  RBI20_RS02720 (RBI20_02720) maiA 577263..577931 (+) 669 WP_099523666.1 maleylacetoacetate isomerase -
  RBI20_RS02725 (RBI20_02725) - 577976..579436 (-) 1461 WP_099484603.1 UdgX family uracil-DNA binding protein -
  RBI20_RS02730 (RBI20_02730) - 579417..580700 (-) 1284 WP_012479051.1 putative DNA modification/repair radical SAM protein -
  RBI20_RS02735 (RBI20_02735) pilU 580831..581958 (-) 1128 WP_308679887.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  RBI20_RS02740 (RBI20_02740) - 582080..582445 (+) 366 WP_005407961.1 DUF4398 domain-containing protein -
  RBI20_RS02745 (RBI20_02745) - 582442..583326 (+) 885 WP_005407962.1 hypothetical protein -
  RBI20_RS02750 (RBI20_02750) - 583651..583887 (+) 237 WP_005407964.1 YdcH family protein -
  RBI20_RS02755 (RBI20_02755) - 584188..585558 (+) 1371 WP_005407965.1 pyridoxal-phosphate dependent enzyme -
  RBI20_RS02760 (RBI20_02760) - 585682..586851 (+) 1170 WP_164225494.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 41340.66 Da        Isoelectric Point: 6.5066

>NTDB_id=871412 RBI20_RS02735 WP_308679887.1 580831..581958(-) (pilU) [Stenotrophomonas maltophilia strain 11066]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEALNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVISQRLVKNKEGRRLPATEVLLNTPMIRDLLRRGQVHEIKAAMEASLEEGMESFDQCL
FRLAKAGTIEQEEALRAADSRDGLALKFRLSEGSSGEHDPYADFSAGAPSITHGF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=871412 RBI20_RS02735 WP_308679887.1 580831..581958(-) (pilU) [Stenotrophomonas maltophilia strain 11066]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAACGCTTCGGACATGTTTCTGACCACCGGGGCACCGGTCTA
CATCAAGATCGAGGGGAAGCTCTATCCGCTGGGCAACACCGGCCTGCCGCCGGGCATGGTCAAGAAGATCGCCTACTCGC
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGCGAGCTGGAACTCAACATGGCCATCGCCCTGCCCGATGCCGGTCGC
TTCCGCGTCAATGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTCATCCGTGCCATCCGCAGCCGGATTCCGAGCATCGA
GGCGCTGAACCTGCCGCAGGTGCTGAAGGACGTCATCATGACCCCGCGCGGGCTGGTACTGGTGGTGGGGTCCACCGGTT
CCGGCAAGTCCACCTCGCTGGCGTCGATGATCGACCACCGCAACAGCACCACCACCGGTCACATCCTCACCATCGAAGAC
CCGATCGAGTACCTGCACAAGCACAAGATGTCGATCGTCAACCAGCGCGAGGTCGGGCTGGATACCCATGCCTTCCACAA
CGCGCTGAAGAACGCGATGCGTGAAGCGCCGGACGTGATCCTGATCGGTGAAATCCTGGATGCGGAGACGATGGAGGCGG
CGATCGCCTTTGCCGAAACCGGCCACCTGTGCCTGGCCACCCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCGGAAAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAACCTGCGTGCGGTGATCAGCCAGCG
CCTGGTGAAGAACAAGGAAGGCCGTCGCCTGCCGGCCACCGAAGTGCTGCTCAACACGCCGATGATCCGCGACCTGCTGC
GTCGCGGCCAGGTGCACGAGATCAAGGCGGCGATGGAAGCATCGCTGGAAGAGGGCATGGAGAGTTTCGACCAGTGCCTG
TTCCGGCTGGCCAAGGCCGGCACCATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGATGGCCTGGCGCTGAA
GTTCCGCCTGTCCGAAGGCAGCAGCGGCGAGCATGACCCGTACGCGGATTTCTCGGCCGGCGCACCCAGCATCACCCACG
GCTTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(111-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

50.975

95.733

0.488
  pilU Vibrio cholerae strain A1552

49.153

94.4

0.464
  pilU Acinetobacter baylyi ADP1

49.153

94.4

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.772

99.467

0.445
  pilT Pseudomonas aeruginosa PAK

42.308

90.133

0.381
  pilT Acinetobacter baumannii D1279779

41.42

90.133

0.373
  pilT Acinetobacter nosocomialis M2

41.42

90.133

0.373
  pilT Acinetobacter baumannii strain A118

41.42

90.133

0.373
  pilT Pseudomonas stutzeri DSM 10701

41.124

90.133

0.371
  pilT Acinetobacter baylyi ADP1

40.882

90.667

0.371
  pilT Legionella pneumophila strain ERS1305867

40.533

90.133

0.365
  pilT Legionella pneumophila strain Lp02

40.533

90.133

0.365
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.141

88.8

0.365
  pilT Vibrio cholerae strain A1552

41.141

88.8

0.365