Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | Q2K57_RS06285 | Genome accession | NZ_CP130701 |
| Coordinates | 1425795..1426931 (-) | Length | 378 a.a. |
| NCBI ID | WP_304526374.1 | Uniprot ID | - |
| Organism | Halomonas sp. I5-271120 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1420795..1431931
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q2K57_RS06275 | tyrS | 1423217..1424416 (-) | 1200 | WP_304526372.1 | tyrosine--tRNA ligase | - |
| Q2K57_RS06280 | - | 1424553..1425710 (+) | 1158 | WP_304526373.1 | anhydro-N-acetylmuramic acid kinase | - |
| Q2K57_RS06285 | pilU | 1425795..1426931 (-) | 1137 | WP_304526374.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| Q2K57_RS06290 | pilT | 1427020..1428051 (-) | 1032 | WP_112055887.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| Q2K57_RS06295 | - | 1428086..1428796 (+) | 711 | WP_304526375.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| Q2K57_RS06300 | proC | 1428935..1429759 (+) | 825 | WP_304526376.1 | pyrroline-5-carboxylate reductase | - |
| Q2K57_RS06305 | - | 1429880..1430470 (+) | 591 | WP_304526377.1 | YggT family protein | - |
| Q2K57_RS06310 | - | 1430573..1431724 (+) | 1152 | WP_304526378.1 | homoserine O-acetyltransferase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 41826.01 Da Isoelectric Point: 6.0629
>NTDB_id=861089 Q2K57_RS06285 WP_304526374.1 1425795..1426931(-) (pilU) [Halomonas sp. I5-271120]
MKANEWLQQLLEIMVDKEASDLLVSVNAPPTLKMAGQLIPLGDQVLSPAQVAELVKAALPPAQRERFASEQEANFALSLP
GRGRFRVSAFQQRNQPAMVLRRISFEIPRLETLNLPATLGELAGAKRGLVLVVGGTGTGKSTTLASMIQQRNETQGGHII
SIEDPIEYVHPHKKAIINQREVGIDTESFEVALKNTLRQAPDVILIGEIRTRKTMEHALTFAETGHLCLATLHANNANQA
LDRIINFFPSERHDQVWLDLSLNLKAIVAQQLLPTQDRGRRAAIEIMLRSPLIGDLIRKGEVAEIKDIMRRSRDLGMQTF
DQALYELYQEGVISEDIAMVHADSANDLRMMIKFGDEGGVADAQGAASHLELRRGDDF
MKANEWLQQLLEIMVDKEASDLLVSVNAPPTLKMAGQLIPLGDQVLSPAQVAELVKAALPPAQRERFASEQEANFALSLP
GRGRFRVSAFQQRNQPAMVLRRISFEIPRLETLNLPATLGELAGAKRGLVLVVGGTGTGKSTTLASMIQQRNETQGGHII
SIEDPIEYVHPHKKAIINQREVGIDTESFEVALKNTLRQAPDVILIGEIRTRKTMEHALTFAETGHLCLATLHANNANQA
LDRIINFFPSERHDQVWLDLSLNLKAIVAQQLLPTQDRGRRAAIEIMLRSPLIGDLIRKGEVAEIKDIMRRSRDLGMQTF
DQALYELYQEGVISEDIAMVHADSANDLRMMIKFGDEGGVADAQGAASHLELRRGDDF
Nucleotide
Download Length: 1137 bp
>NTDB_id=861089 Q2K57_RS06285 WP_304526374.1 1425795..1426931(-) (pilU) [Halomonas sp. I5-271120]
ATGAAAGCGAACGAATGGTTGCAGCAACTGCTCGAGATCATGGTCGATAAGGAAGCTTCGGATCTCCTGGTCTCGGTGAA
TGCTCCACCCACCTTAAAGATGGCCGGGCAGCTTATTCCGCTGGGCGACCAGGTGCTATCGCCGGCTCAGGTGGCCGAGC
TGGTCAAGGCGGCCTTGCCGCCGGCCCAGCGTGAGCGCTTTGCCTCCGAGCAGGAGGCCAACTTTGCGCTGAGCCTTCCT
GGACGCGGGCGCTTTCGCGTCAGCGCCTTCCAGCAGCGTAACCAGCCGGCCATGGTGCTGCGGCGGATATCCTTCGAGAT
TCCTAGGCTCGAGACGCTGAACTTGCCGGCGACGCTGGGTGAGCTGGCTGGCGCCAAGCGCGGCCTGGTGCTGGTAGTCG
GCGGCACCGGTACCGGCAAGTCGACAACCCTGGCGTCGATGATCCAGCAGCGCAACGAGACTCAGGGCGGGCACATCATC
AGCATCGAGGACCCGATCGAGTACGTGCACCCGCACAAGAAGGCGATCATCAATCAGCGGGAAGTGGGCATCGACACCGA
GTCGTTCGAGGTGGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCACCCGCAAGA
CCATGGAGCATGCTCTGACCTTCGCCGAGACCGGTCATCTGTGCCTGGCGACCCTGCATGCGAATAACGCCAACCAGGCC
CTCGATCGGATCATCAACTTCTTCCCCTCGGAGCGCCACGATCAGGTGTGGCTCGACCTGTCGCTAAACCTGAAAGCCAT
CGTCGCCCAACAGCTGCTGCCTACGCAGGACCGTGGGCGCCGCGCGGCCATCGAGATCATGCTGCGCTCACCGCTGATCG
GCGACCTGATCCGCAAGGGAGAAGTCGCCGAGATCAAGGACATTATGCGCCGCTCGCGGGATCTCGGGATGCAGACCTTC
GATCAGGCGCTTTATGAGCTCTACCAGGAGGGAGTGATCAGTGAGGACATCGCCATGGTTCACGCCGACTCGGCCAACGA
CCTGCGCATGATGATCAAGTTCGGCGACGAGGGCGGGGTGGCCGACGCCCAGGGCGCCGCCAGCCACCTCGAGCTGCGGC
GTGGGGATGATTTCTAG
ATGAAAGCGAACGAATGGTTGCAGCAACTGCTCGAGATCATGGTCGATAAGGAAGCTTCGGATCTCCTGGTCTCGGTGAA
TGCTCCACCCACCTTAAAGATGGCCGGGCAGCTTATTCCGCTGGGCGACCAGGTGCTATCGCCGGCTCAGGTGGCCGAGC
TGGTCAAGGCGGCCTTGCCGCCGGCCCAGCGTGAGCGCTTTGCCTCCGAGCAGGAGGCCAACTTTGCGCTGAGCCTTCCT
GGACGCGGGCGCTTTCGCGTCAGCGCCTTCCAGCAGCGTAACCAGCCGGCCATGGTGCTGCGGCGGATATCCTTCGAGAT
TCCTAGGCTCGAGACGCTGAACTTGCCGGCGACGCTGGGTGAGCTGGCTGGCGCCAAGCGCGGCCTGGTGCTGGTAGTCG
GCGGCACCGGTACCGGCAAGTCGACAACCCTGGCGTCGATGATCCAGCAGCGCAACGAGACTCAGGGCGGGCACATCATC
AGCATCGAGGACCCGATCGAGTACGTGCACCCGCACAAGAAGGCGATCATCAATCAGCGGGAAGTGGGCATCGACACCGA
GTCGTTCGAGGTGGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCACCCGCAAGA
CCATGGAGCATGCTCTGACCTTCGCCGAGACCGGTCATCTGTGCCTGGCGACCCTGCATGCGAATAACGCCAACCAGGCC
CTCGATCGGATCATCAACTTCTTCCCCTCGGAGCGCCACGATCAGGTGTGGCTCGACCTGTCGCTAAACCTGAAAGCCAT
CGTCGCCCAACAGCTGCTGCCTACGCAGGACCGTGGGCGCCGCGCGGCCATCGAGATCATGCTGCGCTCACCGCTGATCG
GCGACCTGATCCGCAAGGGAGAAGTCGCCGAGATCAAGGACATTATGCGCCGCTCGCGGGATCTCGGGATGCAGACCTTC
GATCAGGCGCTTTATGAGCTCTACCAGGAGGGAGTGATCAGTGAGGACATCGCCATGGTTCACGCCGACTCGGCCAACGA
CCTGCGCATGATGATCAAGTTCGGCGACGAGGGCGGGGTGGCCGACGCCCAGGGCGCCGCCAGCCACCTCGAGCTGCGGC
GTGGGGATGATTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
61.29 |
98.413 |
0.603 |
| pilU | Vibrio cholerae strain A1552 |
55.707 |
97.354 |
0.542 |
| pilU | Acinetobacter baylyi ADP1 |
55.493 |
93.915 |
0.521 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.857 |
90.741 |
0.389 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.037 |
86.508 |
0.381 |
| pilT | Vibrio cholerae strain A1552 |
44.037 |
86.508 |
0.381 |
| pilT | Legionella pneumophila strain Lp02 |
41.867 |
87.831 |
0.368 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.867 |
87.831 |
0.368 |
| pilT | Neisseria meningitidis 8013 |
40.233 |
90.741 |
0.365 |
| pilT | Neisseria gonorrhoeae MS11 |
40.233 |
90.741 |
0.365 |
| pilT | Acinetobacter nosocomialis M2 |
41.265 |
87.831 |
0.362 |
| pilT | Acinetobacter baumannii D1279779 |
41.265 |
87.831 |
0.362 |
| pilT | Acinetobacter baumannii strain A118 |
41.265 |
87.831 |
0.362 |