Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V6U70_RS00340 Genome accession   NZ_CP145868
Coordinates   56295..56885 (+) Length   196 a.a.
NCBI ID   WP_002886323.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 51295..61885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS00315 (V6U70_00315) - 52423..52878 (-) 456 WP_037603799.1 DUF3021 domain-containing protein -
  V6U70_RS00320 (V6U70_00320) - 52875..53312 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  V6U70_RS00325 (V6U70_00325) - 53491..53796 (+) 306 WP_037603797.1 hypothetical protein -
  V6U70_RS00330 (V6U70_00330) hexB 53848..55785 (+) 1938 WP_037603795.1 DNA mismatch repair endonuclease MutL Machinery gene
  V6U70_RS00335 (V6U70_00335) - 55916..56137 (+) 222 WP_002886321.1 hypothetical protein -
  V6U70_RS00340 (V6U70_00340) ruvA 56295..56885 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA Machinery gene
  V6U70_RS00345 (V6U70_00345) - 56894..57448 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  V6U70_RS00350 (V6U70_00350) cinA 57545..58813 (+) 1269 WP_048790895.1 competence/damage-inducible protein A Machinery gene
  V6U70_RS00355 (V6U70_00355) recA 58849..59988 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  V6U70_RS00360 (V6U70_00360) spx 60155..60553 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21728.12 Da        Isoelectric Point: 5.6710

>NTDB_id=854018 V6U70_RS00340 WP_002886323.1 56295..56885(+) (ruvA) [Streptococcus salivarius strain KSS12]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALI
ALGYKATELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=854018 V6U70_RS00340 WP_002886323.1 56295..56885(+) (ruvA) [Streptococcus salivarius strain KSS12]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ACGATGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAACAAATGGTTCTGGATTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGATT
GCTCTTGGTTATAAAGCCACAGAACTTAAGAAAATCAAGGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCGGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423