Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QYN05_RS22660 Genome accession   NZ_CP129406
Coordinates   4239564..4240013 (+) Length   149 a.a.
NCBI ID   WP_031627735.1    Uniprot ID   A0A6N0KHJ6
Organism   Pseudomonas aeruginosa strain PA272     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4234564..4245013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS22635 yacG 4234727..4234927 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  QYN05_RS22640 coaE 4234924..4235535 (-) 612 WP_003094654.1 dephospho-CoA kinase -
  QYN05_RS22645 pilD 4235532..4236404 (-) 873 WP_003125204.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  QYN05_RS22650 pilC 4236408..4237628 (-) 1221 WP_023089631.1 type 4a pilus biogenesis protein PilC Machinery gene
  QYN05_RS22655 pilB 4237632..4239332 (-) 1701 WP_023089630.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QYN05_RS22660 pilA 4239564..4240013 (+) 450 WP_031627735.1 type 4a pilus biogenesis protein PilA Machinery gene
  QYN05_RS22670 nadC 4240227..4241075 (-) 849 WP_023089629.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QYN05_RS22675 - 4241361..4243616 (+) 2256 WP_034020466.1 DUF1631 domain-containing protein -
  QYN05_RS22680 ampD 4243767..4244333 (+) 567 WP_003104911.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15458.80 Da        Isoelectric Point: 8.4770

>NTDB_id=853102 QYN05_RS22660 WP_031627735.1 4239564..4240013(+) (pilA) [Pseudomonas aeruginosa strain PA272]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALATINPLKTTVEESLSRGIAGSKIKIGTTASTATETYV
GVAPDANKLGVIAVAIEDSGAGDISFTFQTGTSSPKNATKAITLSRTADGVWTCKSTQDEMFIPKGCTK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=853102 QYN05_RS22660 WP_031627735.1 4239564..4240013(+) (pilA) [Pseudomonas aeruginosa strain PA272]
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATCCTGGCGGCGATTGCCAT
TCCCCAGTACCAGAACTATGTGGCGCGTTCGGAAGGTGCTTCGGCGCTGGCGACGATCAATCCGCTGAAGACCACTGTTG
AAGAGTCTCTGTCGCGTGGAATTGCTGGTAGCAAAATTAAAATTGGTACTACTGCTTCTACTGCGACCGAAACATATGTC
GGCGTCGCTCCGGATGCCAACAAGTTGGGTGTAATTGCTGTGGCAATCGAGGATAGTGGTGCAGGTGATATTTCCTTTAC
CTTCCAGACTGGTACCTCTAGTCCTAAGAACGCCACCAAGGCTATTACTCTGAGTCGTACTGCGGATGGTGTTTGGACTT
GTAAGTCCACTCAGGATGAGATGTTCATTCCGAAAGGCTGCACTAAGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-148)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KHJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

68.874

100

0.698
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

49.333

100

0.497
  pilA Vibrio cholerae strain A1552

49.333

100

0.497
  pilA Vibrio cholerae C6706

49.333

100

0.497
  pilA Acinetobacter baumannii strain A118

48.344

100

0.49
  pilA/pilAI Pseudomonas stutzeri DSM 10701

44.667

100

0.45
  comP Acinetobacter baylyi ADP1

41.83

100

0.43
  pilA Vibrio parahaemolyticus RIMD 2210633

43.243

99.329

0.43
  pilA/pilAII Pseudomonas stutzeri DSM 10701

43.357

95.973

0.416
  pilA2 Legionella pneumophila str. Paris

37.931

97.315

0.369
  pilA2 Legionella pneumophila strain ERS1305867

37.931

97.315

0.369