Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V6T26_RS08990 Genome accession   NZ_CP145858
Coordinates   1932550..1933146 (+) Length   198 a.a.
NCBI ID   WP_070838895.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927550..1938146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS08965 (V6T26_08955) - 1927823..1929823 (-) 2001 WP_410541239.1 cell division site-positioning protein MapZ family protein -
  V6T26_RS08970 (V6T26_08960) - 1929826..1930992 (-) 1167 WP_410541240.1 class I SAM-dependent RNA methyltransferase -
  V6T26_RS08980 (V6T26_08970) gpsB 1931517..1931849 (-) 333 WP_002883687.1 cell division regulator GpsB -
  V6T26_RS08985 (V6T26_08975) - 1931958..1932473 (-) 516 WP_410541241.1 DUF1273 domain-containing protein -
  V6T26_RS08990 (V6T26_08980) recU 1932550..1933146 (+) 597 WP_070838895.1 Holliday junction resolvase RecU Machinery gene
  V6T26_RS08995 (V6T26_08985) pbp1a 1933146..1935440 (+) 2295 WP_073689386.1 penicillin-binding protein PBP1A -
  V6T26_RS09000 (V6T26_08990) pepC 1935544..1936881 (-) 1338 WP_070838897.1 aminopeptidase C -
  V6T26_RS09005 (V6T26_08995) - 1936983..1937426 (-) 444 WP_073689387.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22782.33 Da        Isoelectric Point: 9.9828

>NTDB_id=853101 V6T26_RS08990 WP_070838895.1 1932550..1933146(+) (recU) [Streptococcus salivarius strain KSS11]
MVNYPHQISRKIAQVRPKKSNRVDFANRGMSFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIEHMSQVISQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAEVAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=853101 V6T26_RS08990 WP_070838895.1 1932550..1933146(+) (recU) [Streptococcus salivarius strain KSS11]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTCCTAAAAAATCAAATAGAGTTGACTTTGCCAA
TCGGGGGATGAGCTTTGAATCTGCTATTAACGCGACTAATGATTACTATTTGTCGCGTGGTTTAGCCGTTATTCATAAAA
AACCTACCCCTGTTCAAATTGTCAAAGTCGATTATCCCAAACGCTCACGGGCAAAGATTGTAGAAGCTTACTTTAGACAA
GCTTCTACTACCGACTACTCCGGCGTTTACAAAGGATACTACATTGATTTTGAAGCCAAAGAGACACGACAAAAGACATC
CATGCCTATGAAAAACTTTCATGCGCATCAAATTGAGCACATGTCTCAGGTCATCAGTCAAGATGGGATCTGCTTCGTGC
TACTTCACTTCTCGACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAGATTGATAAAGGG
ACGAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGCTATGCAATTGCAGAAGTAGCTTATCCTCAAGTTCCTTACTT
AGAAATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.246

100

0.515