Detailed information NTG0853099

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QYN05_RS22645
• Genome accession: NZ_CP129406
• Coordinates: 4235532..4236404 (-)
• Length: 290 a.a.
• NCBI ID: WP_003125204.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA272
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4230532..4241404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYN05_RS22600	-	4231393..4231563 (-)	171	WP_003094672.1	DUF3094 family protein	-
QYN05_RS22605	-	4231589..4232038 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
QYN05_RS22610	-	4232035..4232664 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QYN05_RS22615	-	4232797..4233222 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
QYN05_RS22620	-	4233219..4233689 (+)	471	WP_003103866.1	hypothetical protein	-
QYN05_RS22625	-	4233686..4234375 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
QYN05_RS22630	-	4234481..4234690 (+)	210	WP_003094660.1	hypothetical protein	-
QYN05_RS22635	yacG	4234727..4234927 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
QYN05_RS22640	coaE	4234924..4235535 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
QYN05_RS22645	pilD	4235532..4236404 (-)	873	WP_003125204.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QYN05_RS22650	pilC	4236408..4237628 (-)	1221	WP_023089631.1	type 4a pilus biogenesis protein PilC	Machinery gene
QYN05_RS22655	pilB	4237632..4239332 (-)	1701	WP_023089630.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QYN05_RS22660	pilA	4239564..4240013 (+)	450	WP_031627735.1	type 4a pilus biogenesis protein PilA	Machinery gene
QYN05_RS22670	nadC	4240227..4241075 (-)	849	WP_023089629.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31839.89 Da
• Isoelectric Point: 7.7068

>NTDB_id=853099 QYN05_RS22645 WP_003125204.1 4235532..4236404(-) (pilD) [Pseudomonas aeruginosa strain PA272]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=853099 QYN05_RS22645 WP_003125204.1 4235532..4236404(-) (pilD) [Pseudomonas aeruginosa strain PA272]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472