Detailed information NTG0853100

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: QYN05_RS22650
• Genome accession: NZ_CP129406
• Coordinates: 4236408..4237628 (-)
• Length: 406 a.a.
• NCBI ID: WP_023089631.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA272
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4231408..4242628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYN05_RS22605	-	4231589..4232038 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
QYN05_RS22610	-	4232035..4232664 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QYN05_RS22615	-	4232797..4233222 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
QYN05_RS22620	-	4233219..4233689 (+)	471	WP_003103866.1	hypothetical protein	-
QYN05_RS22625	-	4233686..4234375 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
QYN05_RS22630	-	4234481..4234690 (+)	210	WP_003094660.1	hypothetical protein	-
QYN05_RS22635	yacG	4234727..4234927 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
QYN05_RS22640	coaE	4234924..4235535 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
QYN05_RS22645	pilD	4235532..4236404 (-)	873	WP_003125204.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QYN05_RS22650	pilC	4236408..4237628 (-)	1221	WP_023089631.1	type 4a pilus biogenesis protein PilC	Machinery gene
QYN05_RS22655	pilB	4237632..4239332 (-)	1701	WP_023089630.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QYN05_RS22660	pilA	4239564..4240013 (+)	450	WP_031627735.1	type 4a pilus biogenesis protein PilA	Machinery gene
QYN05_RS22670	nadC	4240227..4241075 (-)	849	WP_023089629.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44360.15 Da
• Isoelectric Point: 9.8784

>NTDB_id=853100 QYN05_RS22650 WP_023089631.1 4236408..4237628(-) (pilC) [Pseudomonas aeruginosa strain PA272]
MADKALKTSVFIWEGTDKKGAKVKGELTGQNPMLVKAHLRKQGINPLKVRKKGISLLGAGKKVKPMDIALFTRQMATMMG
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKPQYFDELYCNLVDAGEQSGALENLLDRVATYKEKT
ESLKAKIRKAMTYPIAVIIVALIVSAILLIKVVPQFQSVFQGFGAELPAFTQMVVNLSEFLQEWWLAVIVAVGVIGFTFK
ELHKRSKKFRDTLDRTILKLPIFGGIVYKSAVARYARTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGM
QLNFSMRTTSVFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVAMYLPIFQ
LGNVVG

Nucleotide

• Length: 1221 bp

>NTDB_id=853100 QYN05_RS22650 WP_023089631.1 4236408..4237628(-) (pilC) [Pseudomonas aeruginosa strain PA272]
ATGGCGGACAAAGCGTTAAAAACCAGCGTTTTCATCTGGGAGGGCACCGACAAGAAAGGCGCCAAGGTCAAGGGCGAACT
GACCGGGCAGAATCCCATGCTGGTGAAGGCCCATCTGCGCAAGCAAGGCATCAATCCGCTCAAGGTACGCAAGAAAGGTA
TCTCCCTGCTGGGCGCAGGCAAGAAAGTCAAACCCATGGACATCGCCCTGTTCACCCGGCAGATGGCGACCATGATGGGT
GCTGGCGTTCCCCTCCTGCAATCGTTCGACATCATCGGCGAAGGCTTCGACAATCCCAACATGCGCAAGCTGGTGGATGA
GATCAAGCAGGAAGTGTCCTCGGGCAACAGCCTGGCCAACTCACTGAGAAAGAAACCGCAGTACTTCGACGAACTCTATT
GCAACCTGGTCGATGCCGGCGAGCAATCGGGCGCCTTGGAAAACTTGCTGGATAGAGTCGCGACCTACAAGGAAAAAACG
GAATCGTTAAAAGCAAAGATCAGGAAGGCGATGACTTATCCTATCGCCGTCATCATCGTTGCCTTAATCGTCTCCGCCAT
TCTTCTGATCAAGGTCGTCCCGCAGTTCCAATCCGTATTCCAAGGTTTTGGCGCAGAGCTGCCTGCATTCACTCAAATGG
TCGTAAATTTATCCGAGTTCCTACAGGAATGGTGGCTTGCCGTCATCGTTGCCGTGGGGGTGATTGGCTTTACCTTCAAG
GAACTGCATAAACGCTCAAAAAAATTCCGCGACACACTCGACAGAACGATCCTCAAACTTCCCATTTTCGGAGGCATCGT
CTACAAATCTGCGGTCGCTCGTTATGCACGGACCTTGTCCACGACCTTCGCCGCGGGTGTTCCCCTGGTCGATGCGCTCG
ACTCCGTCTCCGGAGCGACCGGCAATATCGTGTTCAAGAACGCGGTCAGCAAGATCAAGCAAGACGTTTCCACCGGCATG
CAGCTCAACTTCTCCATGCGCACCACCAGCGTCTTTCCCAACATGGCGATCCAGATGACCGCCATCGGCGAGGAGTCCGG
TTCGCTCGATGAGATGCTGAGCAAAGTCGCCAGCTACTACGAAGAGGAAGTCGACAACGCCGTGGACAACCTCACCACGC
TCATGGAACCGATGATCATGGCCGTTCTCGGCGTACTGGTTGGCGGTCTGATCGTGGCCATGTACCTTCCGATCTTCCAA
CTCGGCAACGTCGTCGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	76.79	99.754	0.766
pilC	Acinetobacter baumannii D1279779	60.891	99.507	0.606
pilC	Acinetobacter baylyi ADP1	60.345	100	0.603
pilC	Legionella pneumophila strain ERS1305867	54.798	97.537	0.534
pilG	Neisseria meningitidis 44/76-A	45.906	99.261	0.456
pilG	Neisseria gonorrhoeae MS11	45.658	99.261	0.453
pilC	Vibrio cholerae strain A1552	42.611	100	0.426
pilC	Vibrio campbellii strain DS40M4	41.562	97.783	0.406
pilC	Thermus thermophilus HB27	36.908	98.768	0.365