Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   M33023_RS00025 Genome accession   NZ_CP128397
Coordinates   3818..3913 (+) Length   31 a.a.
NCBI ID   WP_341833794.1    Uniprot ID   -
Organism   Candidatus Phytoplasma asteris strain M33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1..8913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M33023_RS00005 (M33023_00010) dnaA 46..1560 (+) 1515 WP_341833620.1 chromosomal replication initiator protein DnaA -
  M33023_RS00010 (M33023_00020) dnaN 1754..2890 (+) 1137 WP_341833621.1 DNA polymerase III subunit beta -
  M33023_RS00015 (M33023_00030) rpsF 3376..3663 (+) 288 WP_011412287.1 30S ribosomal protein S6 -
  M33023_RS00020 - 3678..3743 (+) 66 Protein_3 single-stranded DNA-binding protein -
  M33023_RS00025 ssbB 3818..3913 (+) 96 WP_341833794.1 single-stranded DNA-binding protein Machinery gene
  M33023_RS00030 (M33023_00050) rpsR 4166..4405 (+) 240 WP_341833622.1 30S ribosomal protein S18 -
  M33023_RS00035 (M33023_00060) rplI 4499..7048 (+) 2550 WP_011412290.1 50S ribosomal protein L9 -
  M33023_RS00040 (M33023_00070) dnaB 7045..8388 (+) 1344 WP_341833623.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3389.93 Da        Isoelectric Point: 7.9859

>NTDB_id=847234 M33023_RS00025 WP_341833794.1 3818..3913(+) (ssbB) [Candidatus Phytoplasma asteris strain M33]
MNCTVFGKQAENFEKYISKGALIGVEGSIRV

Nucleotide


Download         Length: 96 bp        

>NTDB_id=847234 M33023_RS00025 WP_341833794.1 3818..3913(+) (ssbB) [Candidatus Phytoplasma asteris strain M33]
ATCAATTGTACTGTTTTTGGTAAACAAGCTGAAAATTTTGAAAAATATATTTCTAAAGGTGCTTTAATAGGTGTTGAAGG
AAGTATTAGAGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

50

96.774

0.484
  ssb Staphylococcus aureus N315

50

90.323

0.452
  ssb Staphylococcus aureus MW2

50

90.323

0.452
  ssbB Lactococcus lactis subsp. cremoris KW2

53.846

83.871

0.452
  ssb Latilactobacillus sakei subsp. sakei 23K

43.333

96.774

0.419
  ssbB/cilA Streptococcus mitis NCTC 12261

43.333

96.774

0.419
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40

96.774

0.387
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

96.774

0.387
  ssbA Bacillus subtilis subsp. subtilis str. 168

40

96.774

0.387
  ssbB/cilA Streptococcus mitis SK321

40

96.774

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

40

96.774

0.387
  ssbB/cilA Streptococcus pneumoniae D39

40

96.774

0.387
  ssbB/cilA Streptococcus pneumoniae R6

40

96.774

0.387
  ssb Neisseria gonorrhoeae MS11

41.379

93.548

0.387
  ssb Neisseria meningitidis MC58

41.379

93.548

0.387