Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QSU95_RS01880 Genome accession   NZ_CP128204
Coordinates   388205..389311 (+) Length   368 a.a.
NCBI ID   WP_158108027.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383205..394311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS01845 (QSU95_01845) - 383556..384155 (-) 600 WP_055467258.1 XTP/dITP diphosphatase -
  QSU95_RS01850 (QSU95_01850) - 384179..384610 (-) 432 WP_014205827.1 DUF4426 domain-containing protein -
  QSU95_RS01855 (QSU95_01855) yggU 384668..384958 (-) 291 WP_004724263.1 DUF167 family protein YggU -
  QSU95_RS01860 (QSU95_01860) - 384958..385515 (-) 558 WP_004724262.1 YggT family protein -
  QSU95_RS01865 (QSU95_01865) proC 385567..386385 (-) 819 WP_004724261.1 pyrroline-5-carboxylate reductase -
  QSU95_RS01870 (QSU95_01870) - 386423..387130 (-) 708 WP_158108025.1 YggS family pyridoxal phosphate-dependent enzyme -
  QSU95_RS01875 (QSU95_01875) pilT 387156..388193 (+) 1038 WP_004724259.1 type IV pilus twitching motility protein PilT Machinery gene
  QSU95_RS01880 (QSU95_01880) pilU 388205..389311 (+) 1107 WP_158108027.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QSU95_RS01885 (QSU95_01885) ruvX 389408..389833 (-) 426 WP_014205821.1 Holliday junction resolvase RuvX -
  QSU95_RS01890 (QSU95_01890) - 389896..390459 (-) 564 WP_286211595.1 YqgE/AlgH family protein -
  QSU95_RS01895 (QSU95_01895) gshB 390498..391454 (-) 957 WP_286211596.1 glutathione synthase -
  QSU95_RS01900 (QSU95_01900) rsmE 391467..392198 (-) 732 WP_004724254.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  QSU95_RS01905 (QSU95_01905) - 392306..393007 (-) 702 WP_286211598.1 endonuclease -
  QSU95_RS01910 (QSU95_01910) - 393146..393646 (-) 501 WP_004724252.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41341.36 Da        Isoelectric Point: 6.4509

>NTDB_id=846760 QSU95_RS01880 WP_158108027.1 388205..389311(+) (pilU) [Vibrio furnissii strain VFBJ05]
MQLEECLQGMMTHKASDLYITVGAPVLYRVDGELRAHGDALNEAQVRTLLAAMMDDTRHADYLATREANFAIVRDLGRFR
VSAFFQRELPGAVIRRIETQIPTFDELKLPPVLKDLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNMHRTGHILTVEDPI
EFVHEHQRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKEQREQFLFDLSMNLKGVVGQQLIRDKNGQGRHGVFEVLLNSPRVSDIIRRGELHELKNTMAKSKEVGMQTFDQALY
QLVVEHKISEQDALHSADSANDLRLMLKTQRGDVTSSGSLDHVQIDME

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=846760 QSU95_RS01880 WP_158108027.1 388205..389311(+) (pilU) [Vibrio furnissii strain VFBJ05]
ATGCAACTTGAGGAGTGCCTGCAAGGCATGATGACGCATAAAGCGTCGGATCTGTATATCACGGTGGGCGCGCCCGTGTT
GTATCGGGTCGATGGTGAACTGCGCGCCCACGGCGACGCGCTGAATGAAGCGCAGGTCAGGACGCTGTTGGCCGCGATGA
TGGATGACACGCGCCATGCCGACTACTTGGCGACGCGTGAAGCCAACTTTGCCATTGTGCGTGATTTAGGGCGTTTTCGC
GTCAGCGCTTTTTTTCAGCGCGAGCTGCCCGGCGCAGTGATCCGCCGCATTGAAACGCAAATTCCCACGTTTGATGAACT
CAAACTGCCACCCGTGTTGAAAGATCTCGCGATTGCCAAACGCGGTTTGGTGTTGGTGGTGGGGGCGACTGGATCGGGGA
AATCGACCACCATGGCCGCCATGACCGGGTATCGCAATATGCATCGCACCGGGCATATCCTGACCGTTGAAGATCCGATT
GAATTTGTCCATGAACATCAGCGCTGCATCGTGACGCAGCGTGAAGTGGGGTTGGACACGGAAAGTTATGAAGTGGCGCT
GAAGAATTCGCTGCGTCAGGCACCGGACATGATTTTGATCGGCGAGATCCGCAGTCGGGAAACCATGGAATACGCAATGA
CGTTTGCCGAAACGGGGCATTTGTGCATGGCCACTTTGCACGCCAACAACGCCAACCAAGCACTTGAGCGGATTTTACAT
CTGGTGCCGAAAGAGCAGCGTGAGCAATTTCTGTTTGATTTGTCGATGAACCTCAAAGGGGTTGTCGGTCAGCAACTGAT
CCGCGATAAAAACGGCCAGGGACGCCACGGCGTGTTTGAAGTGCTGCTCAACAGTCCGCGGGTGTCGGACATCATTCGTC
GCGGCGAGCTGCATGAGTTGAAAAACACCATGGCGAAATCGAAAGAGGTCGGCATGCAGACGTTTGATCAGGCGCTGTAT
CAGTTGGTGGTTGAGCACAAGATCAGCGAGCAAGATGCGCTGCACAGTGCGGATTCGGCCAATGATCTGCGCTTGATGCT
CAAGACGCAGCGGGGCGATGTGACCAGCAGCGGGTCGCTGGATCATGTGCAAATCGACATGGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(66-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

86.141

100

0.861
  pilU Pseudomonas stutzeri DSM 10701

57.429

95.109

0.546
  pilU Acinetobacter baylyi ADP1

54.701

95.38

0.522
  pilT Legionella pneumophila strain Lp02

41.888

92.12

0.386
  pilT Legionella pneumophila strain ERS1305867

41.888

92.12

0.386
  pilT Acinetobacter baylyi ADP1

41.642

92.663

0.386
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.385

88.315

0.383
  pilT Acinetobacter baumannii strain A118

41.003

92.12

0.378
  pilT Acinetobacter nosocomialis M2

41.003

92.12

0.378
  pilT Acinetobacter baumannii D1279779

41.003

92.12

0.378
  pilT Pseudomonas aeruginosa PAK

40.413

92.12

0.372
  pilT Pseudomonas stutzeri DSM 10701

39.233

92.12

0.361
  pilT Vibrio cholerae strain A1552

39.82

90.761

0.361
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

39.82

90.761

0.361