Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | QQA13_RS13435 | Genome accession | NZ_CP127409 |
| Coordinates | 2916387..2917499 (+) | Length | 370 a.a. |
| NCBI ID | WP_108470420.1 | Uniprot ID | - |
| Organism | Rhodanobacter thiooxydans strain C33 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2911387..2922499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA13_RS13415 | - | 2912997..2914367 (-) | 1371 | WP_108470424.1 | pyridoxal-phosphate dependent enzyme | - |
| QQA13_RS13420 | - | 2914527..2914754 (-) | 228 | WP_108470423.1 | YdcH family protein | - |
| QQA13_RS13425 | - | 2915107..2915745 (-) | 639 | WP_108470422.1 | hypothetical protein | - |
| QQA13_RS13430 | - | 2915742..2916302 (-) | 561 | WP_108470421.1 | DUF4398 domain-containing protein | - |
| QQA13_RS13435 | pilU | 2916387..2917499 (+) | 1113 | WP_108470420.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QQA13_RS13440 | maiA | 2917574..2918236 (-) | 663 | WP_108470419.1 | maleylacetoacetate isomerase | - |
| QQA13_RS13445 | - | 2918407..2919591 (+) | 1185 | WP_108470418.1 | phosphoglycerate kinase | - |
| QQA13_RS13450 | - | 2919591..2920229 (+) | 639 | WP_108470417.1 | HAD hydrolase-like protein | - |
| QQA13_RS13455 | tkt | 2920296..2922305 (-) | 2010 | WP_108470416.1 | transketolase | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 41024.26 Da Isoelectric Point: 6.2494
>NTDB_id=844177 QQA13_RS13435 WP_108470420.1 2916387..2917499(+) (pilU) [Rhodanobacter thiooxydans strain C33]
MDIGYFLKLMVDKGASDMFLSTGAPVNIKVEGKLYPLGNTGLPGGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPSIDQLQLPGIFRDLIMEPRGLILVVGATGSGKSTTLAAMLDQRNTNSAGHILTIED
PIEYLHRHKKSIVNQREVGLDTHSYHEALKNAMREAPDVIMIGEIRDTDTMEAAIAFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLRAVISQRLVLGKDGRRIPAAEVLLNTPLIRDMIRRGQIHEIKEAMDRSLQEGMQTFDQSL
YKLYKEGRVELEEALNKSDSRDGLALKIRLAEGGSDNPELAGNDPYGMGF
MDIGYFLKLMVDKGASDMFLSTGAPVNIKVEGKLYPLGNTGLPGGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPSIDQLQLPGIFRDLIMEPRGLILVVGATGSGKSTTLAAMLDQRNTNSAGHILTIED
PIEYLHRHKKSIVNQREVGLDTHSYHEALKNAMREAPDVIMIGEIRDTDTMEAAIAFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLRAVISQRLVLGKDGRRIPAAEVLLNTPLIRDMIRRGQIHEIKEAMDRSLQEGMQTFDQSL
YKLYKEGRVELEEALNKSDSRDGLALKIRLAEGGSDNPELAGNDPYGMGF
Nucleotide
Download Length: 1113 bp
>NTDB_id=844177 QQA13_RS13435 WP_108470420.1 2916387..2917499(+) (pilU) [Rhodanobacter thiooxydans strain C33]
GTGGATATCGGTTATTTCCTCAAGCTCATGGTAGACAAGGGCGCGTCGGACATGTTCCTGTCCACCGGCGCCCCGGTGAA
TATCAAGGTCGAGGGCAAGCTGTATCCGCTTGGCAACACCGGCCTGCCCGGCGGCATGGTCAAGAAGATCGCCTATTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGACCTGGAGCTGAACATGGCGCTGGCGGTGAAGGAAGCCGGCCGT
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGCGCGATCAAGAGCGAGATCCCCAGCATCGA
CCAGCTGCAGCTGCCCGGCATCTTCCGCGACCTGATCATGGAGCCGCGCGGGCTGATCCTGGTGGTCGGCGCCACCGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGCTCGACCAGCGCAACACCAACTCGGCCGGCCACATCCTCACCATCGAGGAT
CCGATCGAATACCTGCACCGGCACAAGAAGTCGATCGTCAACCAGCGCGAGGTGGGGCTGGACACGCACAGCTACCACGA
GGCACTGAAGAACGCGATGCGCGAAGCGCCGGACGTGATCATGATCGGCGAGATCCGCGACACCGACACGATGGAGGCGG
CCATTGCCTTCTCCGAGACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAACGCCGACCAGACGCTGGAGCGCATC
CTCAACTTCTTCCCCGAATCGGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAACCTGCGCGCGGTGATCAGCCAGCG
CCTGGTGCTTGGCAAGGACGGCCGCCGCATCCCGGCCGCCGAAGTGCTGCTGAACACCCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGATCCACGAGATCAAGGAGGCGATGGACCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCAGTCGCTG
TACAAGCTGTACAAGGAAGGCCGCGTGGAACTGGAAGAGGCGCTCAACAAGTCCGATTCGCGCGACGGCCTGGCGCTGAA
GATCCGCCTCGCCGAAGGCGGTTCCGACAACCCGGAACTGGCCGGCAACGATCCGTACGGCATGGGCTTCTGA
GTGGATATCGGTTATTTCCTCAAGCTCATGGTAGACAAGGGCGCGTCGGACATGTTCCTGTCCACCGGCGCCCCGGTGAA
TATCAAGGTCGAGGGCAAGCTGTATCCGCTTGGCAACACCGGCCTGCCCGGCGGCATGGTCAAGAAGATCGCCTATTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGACCTGGAGCTGAACATGGCGCTGGCGGTGAAGGAAGCCGGCCGT
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGCGCGATCAAGAGCGAGATCCCCAGCATCGA
CCAGCTGCAGCTGCCCGGCATCTTCCGCGACCTGATCATGGAGCCGCGCGGGCTGATCCTGGTGGTCGGCGCCACCGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGCTCGACCAGCGCAACACCAACTCGGCCGGCCACATCCTCACCATCGAGGAT
CCGATCGAATACCTGCACCGGCACAAGAAGTCGATCGTCAACCAGCGCGAGGTGGGGCTGGACACGCACAGCTACCACGA
GGCACTGAAGAACGCGATGCGCGAAGCGCCGGACGTGATCATGATCGGCGAGATCCGCGACACCGACACGATGGAGGCGG
CCATTGCCTTCTCCGAGACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAACGCCGACCAGACGCTGGAGCGCATC
CTCAACTTCTTCCCCGAATCGGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAACCTGCGCGCGGTGATCAGCCAGCG
CCTGGTGCTTGGCAAGGACGGCCGCCGCATCCCGGCCGCCGAAGTGCTGCTGAACACCCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGATCCACGAGATCAAGGAGGCGATGGACCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCAGTCGCTG
TACAAGCTGTACAAGGAAGGCCGCGTGGAACTGGAAGAGGCGCTCAACAAGTCCGATTCGCGCGACGGCCTGGCGCTGAA
GATCCGCCTCGCCGAAGGCGGTTCCGACAACCCGGAACTGGCCGGCAACGATCCGTACGGCATGGGCTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
48.267 |
100 |
0.489 |
| pilU | Pseudomonas stutzeri DSM 10701 |
50.997 |
94.865 |
0.484 |
| pilU | Vibrio cholerae strain A1552 |
47.568 |
100 |
0.476 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.248 |
91.622 |
0.405 |
| pilT | Acinetobacter baylyi ADP1 |
42.216 |
90.27 |
0.381 |
| pilT | Legionella pneumophila strain Lp02 |
41.228 |
92.432 |
0.381 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.228 |
92.432 |
0.381 |
| pilT | Acinetobacter baumannii strain A118 |
41.916 |
90.27 |
0.378 |
| pilT | Acinetobacter baumannii D1279779 |
41.916 |
90.27 |
0.378 |
| pilT | Acinetobacter nosocomialis M2 |
41.916 |
90.27 |
0.378 |
| pilT | Pseudomonas aeruginosa PAK |
41.124 |
91.351 |
0.376 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.828 |
91.351 |
0.373 |
| pilT | Vibrio cholerae strain A1552 |
40.356 |
91.081 |
0.368 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.356 |
91.081 |
0.368 |