Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | QO259_RS06440 | Genome accession | NZ_CP127244 |
| Coordinates | 1413558..1413815 (-) | Length | 85 a.a. |
| NCBI ID | WP_207037376.1 | Uniprot ID | - |
| Organism | Salinicola sp. JS01 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1408558..1418815
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QO259_RS06415 (QO259_06415) | - | 1409405..1409800 (-) | 396 | WP_285952220.1 | hypothetical protein | - |
| QO259_RS06420 (QO259_06420) | - | 1409874..1410593 (-) | 720 | WP_285952221.1 | RNA methyltransferase | - |
| QO259_RS06425 (QO259_06425) | groL | 1410737..1412380 (-) | 1644 | WP_035473704.1 | chaperonin GroEL | - |
| QO259_RS06430 (QO259_06430) | - | 1412442..1412735 (-) | 294 | WP_035473701.1 | co-chaperone GroES | - |
| QO259_RS06435 (QO259_06435) | - | 1412945..1413454 (-) | 510 | WP_285952222.1 | FxsA family protein | - |
| QO259_RS06440 (QO259_06440) | comE | 1413558..1413815 (-) | 258 | WP_207037376.1 | ComEA family DNA-binding protein | Machinery gene |
| QO259_RS06445 (QO259_06445) | pyrF | 1414085..1414789 (+) | 705 | WP_285952223.1 | orotidine-5'-phosphate decarboxylase | - |
| QO259_RS06450 (QO259_06450) | lapB | 1414790..1415977 (-) | 1188 | WP_285952224.1 | lipopolysaccharide assembly protein LapB | - |
| QO259_RS06455 (QO259_06455) | - | 1415979..1416284 (-) | 306 | WP_207037379.1 | LapA family protein | - |
| QO259_RS06460 (QO259_06460) | - | 1416364..1416660 (-) | 297 | WP_035473690.1 | integration host factor subunit beta | - |
| QO259_RS06465 (QO259_06465) | - | 1417008..1417295 (+) | 288 | WP_035473687.1 | succinate dehydrogenase assembly factor 2 | - |
| QO259_RS20250 | - | 1417255..1417671 (+) | 417 | WP_353057320.1 | protein YgfX | - |
| QO259_RS06470 (QO259_06470) | - | 1417845..1418081 (-) | 237 | WP_051895978.1 | DUF883 family protein | - |
Sequence
Protein
Download Length: 85 a.a. Molecular weight: 8927.32 Da Isoelectric Point: 4.5045
>NTDB_id=843034 QO259_RS06440 WP_207037376.1 1413558..1413815(-) (comE) [Salinicola sp. JS01]
MKKLFGIALLSLFMAASLPALADPVNINQADAETLATLPGIGEVKAQAIVEDRKANGKYESLDELTRVSGIGEATIAKLK
DDATL
MKKLFGIALLSLFMAASLPALADPVNINQADAETLATLPGIGEVKAQAIVEDRKANGKYESLDELTRVSGIGEATIAKLK
DDATL
Nucleotide
Download Length: 258 bp
>NTDB_id=843034 QO259_RS06440 WP_207037376.1 1413558..1413815(-) (comE) [Salinicola sp. JS01]
ATGAAAAAGCTGTTCGGTATCGCCCTGCTGTCGCTGTTCATGGCCGCCAGCCTGCCGGCGCTCGCCGATCCGGTGAACAT
CAACCAGGCAGATGCCGAGACCCTGGCCACGCTACCGGGTATCGGCGAGGTCAAGGCTCAGGCGATCGTCGAGGACCGCA
AGGCCAACGGCAAGTACGAATCGCTCGACGAGCTCACCCGCGTCAGCGGCATCGGCGAGGCCACCATCGCCAAGCTCAAG
GACGACGCCACCCTCTGA
ATGAAAAAGCTGTTCGGTATCGCCCTGCTGTCGCTGTTCATGGCCGCCAGCCTGCCGGCGCTCGCCGATCCGGTGAACAT
CAACCAGGCAGATGCCGAGACCCTGGCCACGCTACCGGGTATCGGCGAGGTCAAGGCTCAGGCGATCGTCGAGGACCGCA
AGGCCAACGGCAAGTACGAATCGCTCGACGAGCTCACCCGCGTCAGCGGCATCGGCGAGGCCACCATCGCCAAGCTCAAG
GACGACGCCACCCTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.