Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   QMY62_RS05685 Genome accession   NZ_CP125656
Coordinates   1352237..1352668 (+) Length   143 a.a.
NCBI ID   WP_024939397.1    Uniprot ID   -
Organism   Xanthomonas campestris strain GBBC 3139     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347237..1357668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY62_RS05655 (QMY62_05655) - 1347339..1347830 (-) 492 WP_223646366.1 GNAT family N-acetyltransferase -
  QMY62_RS05660 (QMY62_05660) - 1347827..1348117 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  QMY62_RS05665 (QMY62_05665) - 1348193..1348594 (-) 402 WP_283269159.1 SymE family type I addiction module toxin -
  QMY62_RS05670 (QMY62_05670) coaE 1349123..1349746 (-) 624 WP_228424129.1 dephospho-CoA kinase -
  QMY62_RS05675 (QMY62_05675) - 1349760..1350623 (-) 864 WP_040940797.1 A24 family peptidase -
  QMY62_RS05680 (QMY62_05680) pilC 1350630..1351832 (-) 1203 WP_283269162.1 type II secretion system F family protein Machinery gene
  QMY62_RS05685 (QMY62_05685) comP 1352237..1352668 (+) 432 WP_024939397.1 pilin Machinery gene
  QMY62_RS05690 (QMY62_05690) - 1352765..1353178 (+) 414 WP_283269165.1 pilin -
  QMY62_RS05695 (QMY62_05695) pilB 1353220..1354953 (+) 1734 WP_283269167.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMY62_RS05700 (QMY62_05700) - 1355136..1355873 (-) 738 WP_283269169.1 zeta toxin family protein -
  QMY62_RS05705 (QMY62_05705) - 1355873..1356235 (-) 363 WP_217694196.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14594.80 Da        Isoelectric Point: 8.4781

>NTDB_id=832116 QMY62_RS05685 WP_024939397.1 1352237..1352668(+) (comP) [Xanthomonas campestris strain GBBC 3139]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGALPADACVGVGATAATTN
MASIACTPASGNIVVTGDATKTKGTILTYAPTIPAAGNSAVGTTWTCTGSGSQTKYYPAECRR

Nucleotide


Download         Length: 432 bp        

>NTDB_id=832116 QMY62_RS05685 WP_024939397.1 1352237..1352668(+) (comP) [Xanthomonas campestris strain GBBC 3139]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAACTGATGATCGTTGTTGCGATCATCGCCATCCTAGCCGCCATCGCGCT
TCCGGCGTATCAGGACTACACCATTCGCTCGCGCGTCTCGGAACTGGCTGTGATGGCTAGCTCCTTCAAGACCACCGTCG
CAGAAAATATAGCTAACAACGGCGGCGCTTTGCCGGCTGATGCTTGCGTGGGTGTTGGTGCTACGGCTGCGACTACCAAC
ATGGCGTCCATCGCCTGTACTCCCGCTTCTGGCAATATCGTTGTTACCGGTGATGCAACCAAAACTAAGGGTACGATTTT
GACCTACGCGCCCACCATTCCTGCGGCGGGCAACTCTGCGGTTGGTACGACCTGGACGTGCACGGGTAGCGGTAGCCAGA
CAAAGTACTATCCGGCTGAGTGCCGCCGCTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

53.595

100

0.573
  pilA2 Legionella pneumophila str. Paris

55.634

99.301

0.552
  pilA2 Legionella pneumophila strain ERS1305867

54.93

99.301

0.545
  pilA Ralstonia pseudosolanacearum GMI1000

40.244

100

0.462
  pilA Vibrio campbellii strain DS40M4

41.611

100

0.434
  pilA Pseudomonas aeruginosa PAK

37.342

100

0.413
  pilA/pilA1 Eikenella corrodens VA1

38.816

100

0.413
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.278

100

0.406
  pilA Haemophilus influenzae 86-028NP

39.161

100

0.392
  pilA Haemophilus influenzae Rd KW20

38.462

100

0.385
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.241

100

0.378
  pilA Glaesserella parasuis strain SC1401

37.063

100

0.371
  pilA Vibrio parahaemolyticus RIMD 2210633

41.085

90.21

0.371