Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMY62_RS05680 Genome accession   NZ_CP125656
Coordinates   1350630..1351832 (-) Length   400 a.a.
NCBI ID   WP_283269162.1    Uniprot ID   -
Organism   Xanthomonas campestris strain GBBC 3139     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345630..1356832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY62_RS05650 (QMY62_05650) - 1345862..1347196 (+) 1335 WP_012437598.1 HAMP domain-containing sensor histidine kinase -
  QMY62_RS05655 (QMY62_05655) - 1347339..1347830 (-) 492 WP_223646366.1 GNAT family N-acetyltransferase -
  QMY62_RS05660 (QMY62_05660) - 1347827..1348117 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  QMY62_RS05665 (QMY62_05665) - 1348193..1348594 (-) 402 WP_283269159.1 SymE family type I addiction module toxin -
  QMY62_RS05670 (QMY62_05670) coaE 1349123..1349746 (-) 624 WP_228424129.1 dephospho-CoA kinase -
  QMY62_RS05675 (QMY62_05675) - 1349760..1350623 (-) 864 WP_040940797.1 A24 family peptidase -
  QMY62_RS05680 (QMY62_05680) pilC 1350630..1351832 (-) 1203 WP_283269162.1 type II secretion system F family protein Machinery gene
  QMY62_RS05685 (QMY62_05685) comP 1352237..1352668 (+) 432 WP_024939397.1 pilin Machinery gene
  QMY62_RS05690 (QMY62_05690) - 1352765..1353178 (+) 414 WP_283269165.1 pilin -
  QMY62_RS05695 (QMY62_05695) pilB 1353220..1354953 (+) 1734 WP_283269167.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMY62_RS05700 (QMY62_05700) - 1355136..1355873 (-) 738 WP_283269169.1 zeta toxin family protein -
  QMY62_RS05705 (QMY62_05705) - 1355873..1356235 (-) 363 WP_217694196.1 hypothetical protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 43731.90 Da        Isoelectric Point: 10.2563

>NTDB_id=832115 QMY62_RS05680 WP_283269162.1 1350630..1351832(-) (pilC) [Xanthomonas campestris strain GBBC 3139]
MQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVSPKDIAFFSRQMATMMKSGVPIV
GSLEIIGEGHKNPRMRKMVGQIRTDIKGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLETVLDTVANYKENIEALKGK
IKKALFYPAMVVAVALVVSAILLIFVVPQFEEVFKGFGAELPAFTQLIVGASRFMVSYWWVLLFVVAGAVIGFIYAYKRS
PRMQHGMDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAM
KQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=832115 QMY62_RS05680 WP_283269162.1 1350630..1351832(-) (pilC) [Xanthomonas campestris strain GBBC 3139]
ATGCAACCCTTTGTATGGGAAGGGACGGACAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCACGCAACGTGAACAT
GTTGCGTGCAGAACTTCGTCGCCAGGGCATTACACCCACTGTCGTCAAGCCGAAACCCAAGCCACTCTTCGGCGCGGCGG
GCAAGAAAGTCAGCCCCAAGGACATTGCGTTTTTCAGTCGTCAGATGGCAACCATGATGAAGTCCGGCGTTCCCATCGTC
GGATCGCTTGAGATCATTGGCGAGGGGCACAAGAACCCCCGAATGAGGAAGATGGTCGGTCAGATAAGGACCGACATCAA
GGGCGGCTCTTCACTGCATGAAGCGATCAGCAAGCATCCGGTGCAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGG
GCGAGGGTGCGGGCGTGCTTGAGACAGTGCTAGACACAGTTGCCAACTACAAGGAAAACATTGAGGCCCTCAAAGGCAAG
ATCAAGAAGGCACTGTTCTACCCTGCGATGGTGGTCGCAGTTGCACTGGTCGTCAGCGCTATCCTGCTAATTTTCGTGGT
CCCTCAGTTCGAAGAAGTCTTCAAGGGTTTTGGCGCGGAATTACCCGCCTTTACCCAGTTGATTGTGGGGGCTTCACGCT
TCATGGTCAGTTATTGGTGGGTTCTGTTGTTCGTTGTAGCAGGCGCGGTGATTGGTTTTATTTATGCCTATAAGCGTTCG
CCACGCATGCAGCACGGAATGGATCGCCTAATCCTGAAGGTGCCCGTGATAGGGCAAATCATGCATAACAGTGCTATCGC
ACGCTTCGCTCGCACCACTGCCGTCACGTTCAAGGCGGGTGTTCCGCTGGTGGAGGCTCTAGGCATCGTGGCTGGCGCAA
CCGGCAACAAGGTGTACGAAGAAGCCGTGCTGCGTATGCGGGACGATGTATCAGTTGGCTATCCTGTGAACATGGCCATG
AAGCAGGTCAACCTGTTCCCCCATATGGTCATCCAAATGACCGCAATCGGTGAGGAGGCGGGCGCCTTGGACGCGATGCT
ATTCAAGGTGGCTGAGTACTTCGAGCAAGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTACTGGAACCACTCATCA
TGGTGTTCATCGGCACCATCGTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTCGTTGGA
TAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(65-188)

Type II secretion system (T2SS), protein F (T2SSF)

(269-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

99

0.533
  pilC Acinetobacter baylyi ADP1

52.75

100

0.528
  pilC Legionella pneumophila strain ERS1305867

52.778

99

0.523
  pilC Acinetobacter baumannii D1279779

50.25

100

0.503
  pilG Neisseria gonorrhoeae MS11

44.14

100

0.443
  pilG Neisseria meningitidis 44/76-A

43.641

100

0.438
  pilC Vibrio cholerae strain A1552

41

100

0.41
  pilC Vibrio campbellii strain DS40M4

39.552

100

0.397
  pilC Thermus thermophilus HB27

37.656

100

0.378