Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   P3R60_RS05455 Genome accession   NZ_CP120510
Coordinates   1043575..1043808 (-) Length   77 a.a.
NCBI ID   WP_160545162.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1038575..1048808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS05415 - 1038841..1039293 (-) 453 WP_218653899.1 hypothetical protein -
  P3R60_RS05420 - 1039306..1039503 (-) 198 WP_218653898.1 helix-turn-helix transcriptional regulator -
  P3R60_RS05425 - 1039866..1041056 (-) 1191 WP_316605957.1 acetate kinase -
  P3R60_RS05430 comYH 1041117..1042070 (-) 954 WP_218653896.1 class I SAM-dependent methyltransferase Machinery gene
  P3R60_RS05435 comGG 1042113..1042514 (-) 402 WP_316605958.1 competence type IV pilus minor pilin ComGG -
  P3R60_RS05440 comYF 1042492..1042947 (-) 456 WP_407082262.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3R60_RS05445 comGE 1042907..1043206 (-) 300 WP_218653893.1 competence type IV pilus minor pilin ComGE -
  P3R60_RS05450 comGD 1043178..1043594 (-) 417 WP_218653892.1 competence type IV pilus minor pilin ComGD -
  P3R60_RS05455 comYC 1043575..1043808 (-) 234 WP_160545162.1 competence type IV pilus major pilin ComGC Machinery gene
  P3R60_RS05460 comYB 1043869..1044897 (-) 1029 WP_218654380.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3R60_RS05465 comYA 1044821..1045774 (-) 954 WP_218653890.1 competence type IV pilus ATPase ComGA Machinery gene
  P3R60_RS05470 - 1045837..1046217 (-) 381 WP_218653889.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8574.15 Da        Isoelectric Point: 6.2818

>NTDB_id=805855 P3R60_RS05455 WP_160545162.1 1043575..1043808(-) (comYC) [Streptococcus pluranimalium strain SP21-2]
MLFVLLIISVLMLLFVPNLSKQKAAVDEKGKAAVVKVVESQMELYEMKEDAKPSIQQLVDGGYITQKQADTYAEAKK

Nucleotide


Download         Length: 234 bp        

>NTDB_id=805855 P3R60_RS05455 WP_160545162.1 1043575..1043808(-) (comYC) [Streptococcus pluranimalium strain SP21-2]
ATGCTCTTCGTGCTTCTTATCATCAGTGTGCTTATGCTTTTGTTTGTGCCTAATTTGAGCAAGCAAAAGGCGGCTGTTGA
TGAAAAAGGAAAGGCAGCAGTGGTAAAGGTTGTCGAGAGTCAGATGGAGTTGTATGAAATGAAAGAAGATGCCAAACCAT
CTATTCAACAATTAGTGGATGGTGGTTATATTACGCAAAAGCAAGCTGATACTTATGCAGAAGCTAAGAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

64.935

100

0.649
  comYC Streptococcus gordonii str. Challis substr. CH1

67.123

94.805

0.636
  comGC/cglC Streptococcus pneumoniae Rx1

63.514

96.104

0.61
  comGC/cglC Streptococcus pneumoniae D39

63.514

96.104

0.61
  comGC/cglC Streptococcus pneumoniae R6

63.514

96.104

0.61
  comGC/cglC Streptococcus pneumoniae TIGR4

63.514

96.104

0.61
  comGC/cglC Streptococcus mitis NCTC 12261

58.333

77.922

0.455
  comGC/cglC Streptococcus mitis SK321

58.333

77.922

0.455
  comGC Lactococcus lactis subsp. cremoris KW2

58.333

77.922

0.455
  comGC Staphylococcus aureus MW2

46.377

89.61

0.416
  comGC Staphylococcus aureus N315

46.377

89.61

0.416
  comYC Streptococcus mutans UA140

51.724

75.325

0.39
  comYC Streptococcus mutans UA159

51.724

75.325

0.39