Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   RKQ58_RS04005 Genome accession   NZ_CP134579
Coordinates   622462..622977 (-) Length   171 a.a.
NCBI ID   WP_140986473.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 617462..627977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS03980 (RKQ58_03980) - 618008..619651 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  RKQ58_RS03985 (RKQ58_03985) - 619644..620129 (+) 486 WP_000935253.1 DUF934 domain-containing protein -
  RKQ58_RS03990 (RKQ58_03990) - 620212..620565 (+) 354 WP_000457783.1 multidrug efflux SMR transporter -
  RKQ58_RS03995 (RKQ58_03995) - 620608..621051 (-) 444 WP_001176583.1 VOC family protein -
  RKQ58_RS04000 (RKQ58_04000) - 621178..622353 (-) 1176 WP_000129971.1 thiolase family protein -
  RKQ58_RS04005 (RKQ58_04005) fimT 622462..622977 (-) 516 WP_140986473.1 GspH/FimT family pseudopilin Machinery gene
  RKQ58_RS04010 (RKQ58_04010) omp38 623359..624429 (+) 1071 WP_000777877.1 outer membrane protein Omp38 -
  RKQ58_RS04015 (RKQ58_04015) - 624554..624697 (-) 144 WP_162138624.1 hypothetical protein -
  RKQ58_RS04020 (RKQ58_04020) - 624716..625921 (-) 1206 WP_000512707.1 RtcB family protein -
  RKQ58_RS04025 (RKQ58_04025) - 626199..627659 (-) 1461 WP_215275657.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19614.83 Da        Isoelectric Point: 8.4960

>NTDB_id=805853 RKQ58_RS04005 WP_140986473.1 622462..622977(-) (fimT) [Acinetobacter baumannii strain XH1034]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NHVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=805853 RKQ58_RS04005 WP_140986473.1 622462..622977(-) (fimT) [Acinetobacter baumannii strain XH1034]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCACGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427