Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   P3R60_RS05440 Genome accession   NZ_CP120510
Coordinates   1042492..1042947 (-) Length   151 a.a.
NCBI ID   WP_407082262.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037492..1047947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS05410 - 1038136..1038807 (-) 672 WP_316605956.1 type II CAAX endopeptidase family protein -
  P3R60_RS05415 - 1038841..1039293 (-) 453 WP_218653899.1 hypothetical protein -
  P3R60_RS05420 - 1039306..1039503 (-) 198 WP_218653898.1 helix-turn-helix transcriptional regulator -
  P3R60_RS05425 - 1039866..1041056 (-) 1191 WP_316605957.1 acetate kinase -
  P3R60_RS05430 comYH 1041117..1042070 (-) 954 WP_218653896.1 class I SAM-dependent methyltransferase Machinery gene
  P3R60_RS05435 comGG 1042113..1042514 (-) 402 WP_316605958.1 competence type IV pilus minor pilin ComGG -
  P3R60_RS05440 comYF 1042492..1042947 (-) 456 WP_407082262.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3R60_RS05445 comGE 1042907..1043206 (-) 300 WP_218653893.1 competence type IV pilus minor pilin ComGE -
  P3R60_RS05450 comGD 1043178..1043594 (-) 417 WP_218653892.1 competence type IV pilus minor pilin ComGD -
  P3R60_RS05455 comYC 1043575..1043808 (-) 234 WP_160545162.1 competence type IV pilus major pilin ComGC Machinery gene
  P3R60_RS05460 comYB 1043869..1044897 (-) 1029 WP_218654380.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3R60_RS05465 comYA 1044821..1045774 (-) 954 WP_218653890.1 competence type IV pilus ATPase ComGA Machinery gene
  P3R60_RS05470 - 1045837..1046217 (-) 381 WP_218653889.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 17774.64 Da        Isoelectric Point: 10.3011

>NTDB_id=805854 P3R60_RS05440 WP_407082262.1 1042492..1042947(-) (comYF) [Streptococcus pluranimalium strain SP21-2]
MRRRFFVLKYYHLKAFTLMECLLALLVLSGSIQVYQAMTKVTSTHVRELSQPKDQDWLLFCQQFRSELAGSQLVKVSDDR
LVILKNTQTLAFGKSKKEDFRKTSGDGRGFQPMIYNIESTHFRRFNQTISVQLIFKDGRVREFLYAFEKET

Nucleotide


Download         Length: 456 bp        

>NTDB_id=805854 P3R60_RS05440 WP_407082262.1 1042492..1042947(-) (comYF) [Streptococcus pluranimalium strain SP21-2]
ATGAGAAGGAGATTTTTCGTGTTAAAATATTATCACCTTAAGGCATTCACCTTGATGGAGTGTTTGCTGGCATTACTGGT
TCTATCGGGCTCCATACAGGTATACCAAGCCATGACTAAGGTGACTTCAACTCATGTTCGAGAACTCAGCCAACCTAAAG
ATCAGGACTGGTTGCTCTTTTGCCAGCAATTTCGCTCAGAATTAGCAGGTTCTCAGTTGGTTAAAGTTTCTGATGATAGA
TTAGTCATCTTAAAAAATACCCAAACTTTGGCTTTTGGTAAATCAAAAAAAGAGGATTTTCGCAAAACGAGTGGCGATGG
TCGCGGCTTTCAACCTATGATTTATAACATAGAGTCAACTCATTTTAGGCGGTTTAATCAGACCATCAGTGTTCAACTCA
TTTTTAAAGATGGAAGGGTGCGTGAGTTTCTCTATGCTTTTGAAAAAGAGACTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(43-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA159

53.957

92.053

0.497
  comYF Streptococcus mutans UA140

53.237

92.053

0.49
  comGF/cglF Streptococcus pneumoniae D39

43.662

94.04

0.411
  comGF/cglF Streptococcus pneumoniae Rx1

43.662

94.04

0.411
  comGF/cglF Streptococcus pneumoniae R6

43.662

94.04

0.411
  comGF/cglF Streptococcus pneumoniae TIGR4

43.662

94.04

0.411
  comGF/cglF Streptococcus mitis NCTC 12261

43.262

93.377

0.404
  comGF/cglF Streptococcus mitis SK321

40.426

93.377

0.377