Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   P3R60_RS05460 Genome accession   NZ_CP120510
Coordinates   1043869..1044897 (-) Length   342 a.a.
NCBI ID   WP_218654380.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1038869..1049897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS05420 - 1039306..1039503 (-) 198 WP_218653898.1 helix-turn-helix transcriptional regulator -
  P3R60_RS05425 - 1039866..1041056 (-) 1191 WP_316605957.1 acetate kinase -
  P3R60_RS05430 comYH 1041117..1042070 (-) 954 WP_218653896.1 class I SAM-dependent methyltransferase Machinery gene
  P3R60_RS05435 comGG 1042113..1042514 (-) 402 WP_316605958.1 competence type IV pilus minor pilin ComGG -
  P3R60_RS05440 comYF 1042492..1042947 (-) 456 WP_407082262.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3R60_RS05445 comGE 1042907..1043206 (-) 300 WP_218653893.1 competence type IV pilus minor pilin ComGE -
  P3R60_RS05450 comGD 1043178..1043594 (-) 417 WP_218653892.1 competence type IV pilus minor pilin ComGD -
  P3R60_RS05455 comYC 1043575..1043808 (-) 234 WP_160545162.1 competence type IV pilus major pilin ComGC Machinery gene
  P3R60_RS05460 comYB 1043869..1044897 (-) 1029 WP_218654380.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3R60_RS05465 comYA 1044821..1045774 (-) 954 WP_218653890.1 competence type IV pilus ATPase ComGA Machinery gene
  P3R60_RS05470 - 1045837..1046217 (-) 381 WP_218653889.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 39061.50 Da        Isoelectric Point: 9.5379

>NTDB_id=805856 P3R60_RS05460 WP_218654380.1 1043869..1044897(-) (comYB) [Streptococcus pluranimalium strain SP21-2]
MSFLKQDISLRSRLKPRVLAIQKQVKIIKLFNTLLSSGFNLPETVDFLKRSQLIPDKQVQIMYETLLAGFGLPVLMKNLG
FSDTVVTQLSLAETHGNSQKTLSKIENYLRQVSSVKKKLVEVGSYPIVLLVFLVLIMLGLKHYLLPQLAEGNTATAILEY
FPQFFLGGLFLSAILIFLAVRMAPKVEALRLYRFLSSLPFLGSLIKVYLTAYYAREWGNLLGQGVEMTRIVSLMQEQESR
LFVSIGRDMQEALLDGQSFHAKVLEYPFFLKELSLIIEYGNAKGHLGQELEVFSEELWEQFFYRVNRAMQLVQPLIFVMV
ALMIVMIYAAMLLPMYQSMEVM

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=805856 P3R60_RS05460 WP_218654380.1 1043869..1044897(-) (comYB) [Streptococcus pluranimalium strain SP21-2]
TTGAGCTTTTTGAAGCAGGATATATCACTGAGGAGCAGGTTAAAACCGAGAGTATTAGCTATTCAGAAGCAGGTTAAAAT
CATAAAACTCTTTAATACTCTTTTGTCCTCGGGCTTTAATCTACCTGAAACGGTTGATTTCCTGAAGCGTAGTCAACTGA
TACCAGATAAACAGGTTCAAATCATGTATGAAACCTTGTTAGCTGGTTTTGGGTTACCGGTTTTGATGAAAAATTTGGGT
TTTTCAGATACGGTTGTCACGCAGCTATCTTTGGCAGAAACACATGGTAACAGTCAAAAGACTTTGTCTAAAATTGAAAA
TTATTTAAGACAGGTTAGTTCGGTTAAGAAAAAGCTGGTTGAAGTGGGATCTTACCCTATTGTGTTATTAGTTTTTTTGG
TTTTAATCATGCTGGGGCTAAAACATTATCTCTTACCTCAGCTAGCTGAAGGTAACACAGCGACAGCCATTTTAGAATAT
TTTCCTCAGTTCTTTTTAGGTGGGCTGTTCTTAAGTGCAATTCTTATCTTTTTAGCTGTTAGGATGGCACCAAAGGTGGA
AGCACTGAGGCTTTATCGGTTTTTGAGTAGTCTTCCTTTTTTGGGCAGTCTTATCAAAGTTTATTTGACGGCTTATTATG
CGCGTGAGTGGGGGAATCTTTTAGGTCAAGGGGTGGAGATGACGAGAATTGTGTCGCTCATGCAGGAACAGGAATCACGA
CTTTTTGTAAGTATTGGTCGAGATATGCAGGAGGCACTTCTAGATGGTCAATCTTTTCATGCTAAGGTTTTAGAGTATCC
ATTCTTCTTGAAAGAGTTAAGTCTGATTATTGAGTATGGTAATGCCAAAGGGCATCTTGGTCAAGAGTTAGAAGTTTTCT
CTGAAGAGCTTTGGGAACAGTTTTTTTATCGTGTGAATAGGGCTATGCAGTTAGTTCAGCCCCTTATTTTTGTCATGGTT
GCCTTGATGATTGTTATGATCTACGCAGCTATGCTTCTACCAATGTATCAATCTATGGAGGTTATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)

Type II secretion system (T2SS), protein F (T2SSF)

(29-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

59.238

99.708

0.591
  comYB Streptococcus mutans UA159

59.238

99.708

0.591
  comYB Streptococcus gordonii str. Challis substr. CH1

53.846

100

0.553
  comGB/cglB Streptococcus mitis NCTC 12261

54.328

97.953

0.532
  comGB/cglB Streptococcus mitis SK321

53.731

97.953

0.526
  comGB/cglB Streptococcus pneumoniae Rx1

52.836

97.953

0.518
  comGB/cglB Streptococcus pneumoniae D39

52.836

97.953

0.518
  comGB/cglB Streptococcus pneumoniae R6

52.836

97.953

0.518
  comGB/cglB Streptococcus pneumoniae TIGR4

52.836

97.953

0.518
  comGB Lactococcus lactis subsp. cremoris KW2

47.181

98.538

0.465