Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   P3R60_RS05465 Genome accession   NZ_CP120510
Coordinates   1044821..1045774 (-) Length   317 a.a.
NCBI ID   WP_218653890.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1039821..1050774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS05425 - 1039866..1041056 (-) 1191 WP_316605957.1 acetate kinase -
  P3R60_RS05430 comYH 1041117..1042070 (-) 954 WP_218653896.1 class I SAM-dependent methyltransferase Machinery gene
  P3R60_RS05435 comGG 1042113..1042514 (-) 402 WP_316605958.1 competence type IV pilus minor pilin ComGG -
  P3R60_RS05440 comYF 1042492..1042947 (-) 456 WP_407082262.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3R60_RS05445 comGE 1042907..1043206 (-) 300 WP_218653893.1 competence type IV pilus minor pilin ComGE -
  P3R60_RS05450 comGD 1043178..1043594 (-) 417 WP_218653892.1 competence type IV pilus minor pilin ComGD -
  P3R60_RS05455 comYC 1043575..1043808 (-) 234 WP_160545162.1 competence type IV pilus major pilin ComGC Machinery gene
  P3R60_RS05460 comYB 1043869..1044897 (-) 1029 WP_218654380.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3R60_RS05465 comYA 1044821..1045774 (-) 954 WP_218653890.1 competence type IV pilus ATPase ComGA Machinery gene
  P3R60_RS05470 - 1045837..1046217 (-) 381 WP_218653889.1 DUF1033 family protein -
  P3R60_RS05475 rpoC 1046595..1050227 (-) 3633 WP_104967104.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35805.78 Da        Isoelectric Point: 5.9281

>NTDB_id=805857 P3R60_RS05465 WP_218653890.1 1044821..1045774(-) (comYA) [Streptococcus pluranimalium strain SP21-2]
MVQDLAKELIVQAVKYEAQDVYIIPRKDDYDVFMRINDERRFIETHGFDRMASLISHFKFVAGMTVGEKRRSQLGSCDYD
IGSAKLVSLRLSTVGDYRGHESLVIRLLHDGRQDLRYWFNGIRNIMAEFSSRGLYLFSGPTGSGKTTLMYQLLKETCKDK
QIISIEDPVEIKDDSILQLQLNEDIGMTYDSLIKLSLRHRPDVLVIGEIRDTQTAQAAIRASLTGATVFATIHSKSIPGV
YYRMIELGVSKDDLKNSLAGVCYQRLIGGGGLIDVAKDKFQDHSSSQWNQYLVELFEAGYITEEQVKTESISYSEAG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=805857 P3R60_RS05465 WP_218653890.1 1044821..1045774(-) (comYA) [Streptococcus pluranimalium strain SP21-2]
ATGGTTCAAGATTTAGCAAAGGAACTGATTGTTCAGGCAGTCAAATATGAAGCTCAAGATGTTTATATCATTCCTAGAAA
GGATGATTACGATGTTTTTATGCGTATTAATGACGAGAGGAGATTTATTGAAACTCATGGCTTTGATCGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGAATGACTGTCGGGGAAAAGCGCCGAAGTCAACTAGGATCTTGTGATTATGAT
ATTGGTAGTGCTAAGCTAGTTTCTTTACGCCTCTCAACTGTCGGAGATTACCGAGGGCATGAGAGTTTGGTGATTCGCTT
GCTGCATGATGGGCGTCAGGACTTACGCTATTGGTTCAATGGTATACGTAATATCATGGCAGAATTTAGTTCCAGAGGTC
TATATCTTTTTTCGGGACCGACTGGGAGCGGCAAAACAACTCTCATGTATCAATTGTTAAAGGAAACATGTAAAGATAAA
CAGATTATTTCTATTGAAGATCCGGTTGAAATTAAGGATGATAGCATTTTACAATTACAGCTTAATGAAGATATTGGTAT
GACTTACGATAGTCTGATTAAGTTGTCGTTGAGACATCGTCCAGATGTATTGGTTATTGGTGAAATTAGGGATACGCAAA
CAGCGCAAGCGGCTATTCGAGCTAGTTTGACTGGTGCTACAGTCTTTGCAACCATTCATTCTAAGAGTATTCCAGGGGTT
TATTACCGCATGATAGAATTGGGTGTTTCTAAAGATGATCTAAAAAATAGTCTGGCGGGAGTTTGTTATCAACGTTTGAT
AGGAGGAGGTGGATTGATAGATGTGGCAAAAGATAAGTTCCAAGATCACTCATCAAGCCAGTGGAACCAATACTTGGTTG
AGCTTTTTGAAGCAGGATATATCACTGAGGAGCAGGTTAAAACCGAGAGTATTAGCTATTCAGAAGCAGGTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

65.273

98.107

0.64
  comYA Streptococcus mutans UA159

65.273

98.107

0.64
  comYA Streptococcus gordonii str. Challis substr. CH1

62.025

99.685

0.618
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

62.42

99.054

0.618
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

61.783

99.054

0.612
  comGA/cglA/cilD Streptococcus pneumoniae R6

61.783

99.054

0.612
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

61.783

99.054

0.612
  comGA/cglA/cilD Streptococcus pneumoniae D39

61.783

99.054

0.612
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.29

97.792

0.599
  comGA Lactococcus lactis subsp. cremoris KW2

50.158

100

0.502