Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   PWW29_RS16345 Genome accession   NZ_CP118582
Coordinates   3504499..3505605 (-) Length   368 a.a.
NCBI ID   WP_017817653.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish4     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3499499..3510605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS16315 - 3500084..3500581 (+) 498 WP_274883239.1 SprT family zinc-dependent metalloprotease -
  PWW29_RS16320 endA 3500733..3501428 (+) 696 WP_005449743.1 deoxyribonuclease I -
  PWW29_RS16325 rsmE 3501575..3502306 (+) 732 WP_274883240.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PWW29_RS16330 gshB 3502321..3503271 (+) 951 WP_005449741.1 glutathione synthase -
  PWW29_RS16335 - 3503401..3503964 (+) 564 WP_005449740.1 YqgE/AlgH family protein -
  PWW29_RS16340 ruvX 3504014..3504439 (+) 426 WP_005449738.1 Holliday junction resolvase RuvX -
  PWW29_RS16345 pilU 3504499..3505605 (-) 1107 WP_017817653.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PWW29_RS16350 pilT 3505637..3506677 (-) 1041 WP_005425810.1 type IV pilus twitching motility protein PilT Machinery gene
  PWW29_RS16355 - 3506706..3507416 (+) 711 WP_009697582.1 YggS family pyridoxal phosphate-dependent enzyme -
  PWW29_RS16360 proC 3507548..3508366 (+) 819 WP_274883242.1 pyrroline-5-carboxylate reductase -
  PWW29_RS16365 - 3508420..3508977 (+) 558 WP_005425806.1 YggT family protein -
  PWW29_RS16370 yggU 3508977..3509267 (+) 291 WP_005425805.1 DUF167 family protein YggU -
  PWW29_RS16375 - 3509328..3509759 (+) 432 WP_005425804.1 DUF4426 domain-containing protein -
  PWW29_RS16380 - 3509865..3510467 (+) 603 WP_274883243.1 XTP/dITP diphosphatase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41277.40 Da        Isoelectric Point: 6.7730

>NTDB_id=793630 PWW29_RS16345 WP_017817653.1 3504499..3505605(-) (pilU) [Vibrio harveyi strain fish4]
MDLNKFLEGMLALKASDLYITVGAPILFRVDGELRPQGDKLSENDVALLLDSAMDPERRQEFRKSRESNFAIVRDCGRFR
VSAFFQRELPGAVIRRIETNIPTFEQLKLPLVLQDLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNNNKTGHILTVEDPI
EFVHEHKRCIVTQREVGLDTDSYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKDQKDQFLFDLSMNLKGVVGQQLIRDKNGQGRHGVFEILLNSPRVSDLIRRGDLHELKATMARSNEFGMLTFDQSLY
KLVMQGKISEEDALHSADSANDLRLMLKTQRGEAFSTGSLANVKIDMD

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=793630 PWW29_RS16345 WP_017817653.1 3504499..3505605(-) (pilU) [Vibrio harveyi strain fish4]
ATGGATCTGAATAAATTTCTCGAAGGCATGCTGGCGTTAAAAGCGTCGGATCTATACATCACTGTCGGTGCCCCGATCTT
GTTTCGTGTGGATGGCGAATTGCGTCCGCAAGGCGATAAGCTGAGCGAAAATGACGTAGCCTTGTTGCTTGATAGTGCAA
TGGACCCGGAGCGACGACAAGAGTTTCGCAAAAGCCGTGAGTCGAACTTTGCCATTGTCCGTGATTGCGGTCGCTTCCGT
GTCAGTGCCTTCTTCCAACGTGAATTACCGGGAGCCGTCATTCGTCGTATTGAAACCAATATTCCAACGTTTGAGCAGCT
TAAGTTGCCTTTGGTGCTGCAAGATCTTGCAATTGCCAAGCGTGGTTTGGTGCTGGTGGTTGGTGCGACAGGCTCTGGTA
AGTCGACCACCATGGCTGCGATGACGGGTTATCGCAACAACAACAAGACTGGTCATATTCTTACGGTAGAAGACCCAATT
GAATTTGTGCATGAGCATAAACGTTGTATTGTGACTCAGCGTGAAGTGGGCTTGGATACTGACAGCTATGAAGTGGCGTT
GAAGAATTCGTTGCGTCAGGCACCAGACATGATTTTGATTGGTGAGATCCGAAGCCGAGAAACGATGGAATACGCAATGA
CCTTTGCTGAAACTGGTCACTTGTGCATGGCTACATTGCACGCCAACAACGCAAACCAAGCACTTGAACGTATTTTGCAC
TTGGTGCCGAAAGACCAGAAAGATCAGTTCTTGTTTGATCTGTCGATGAACTTAAAAGGCGTAGTAGGTCAGCAGTTGAT
CCGTGATAAGAACGGTCAGGGGCGTCATGGCGTGTTTGAGATCTTATTAAATAGCCCGCGTGTATCCGATCTGATCCGTC
GAGGCGATCTTCATGAGTTGAAAGCAACCATGGCTCGATCCAATGAATTTGGGATGTTGACCTTCGACCAATCGCTCTAC
AAGTTAGTGATGCAAGGTAAGATCAGTGAAGAAGATGCATTGCACAGTGCGGACTCTGCCAACGATCTGCGTTTGATGTT
GAAGACGCAACGTGGTGAAGCATTCTCTACGGGCAGTTTGGCGAACGTTAAGATCGATATGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(61-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

82.337

100

0.823
  pilU Pseudomonas stutzeri DSM 10701

59.143

95.109

0.563
  pilU Acinetobacter baylyi ADP1

55.556

95.38

0.53
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.308

88.315

0.391
  pilT Acinetobacter baylyi ADP1

41.57

93.478

0.389
  pilT Legionella pneumophila strain ERS1305867

41.888

92.12

0.386
  pilT Acinetobacter baumannii D1279779

41.888

92.12

0.386
  pilT Acinetobacter baumannii strain A118

41.888

92.12

0.386
  pilT Acinetobacter nosocomialis M2

41.888

92.12

0.386
  pilT Legionella pneumophila strain Lp02

41.888

92.12

0.386
  pilT Pseudomonas aeruginosa PAK

41.593

92.12

0.383
  pilT Pseudomonas stutzeri DSM 10701

40.643

92.935

0.378
  pilT Vibrio cholerae strain A1552

40.719

90.761

0.37
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.719

90.761

0.37