Detailed information NTG0077261

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: IDSSA_RS09060
• Genome accession: NZ_AP025249
• Coordinates: 1816288..1816890 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271544.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain IDSA1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1811288..1821890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IDSSA_RS09040 (IDSSA_0117600)	yajC	1812784..1813044 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
IDSSA_RS09045 (IDSSA_0117610)	tgt	1813063..1814202 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
IDSSA_RS09050 (IDSSA_0117620)	queA	1814225..1815250 (-)	1026	WP_001019171.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
IDSSA_RS09055 (IDSSA_0117630)	ruvB	1815252..1816256 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IDSSA_RS09060 (IDSSA_0117640)	ruvA	1816288..1816890 (-)	603	WP_000271544.1	Holliday junction branch migration protein RuvA	Machinery gene
IDSSA_RS09065 (IDSSA_0117650)	-	1816904..1817359 (-)	456	WP_000368902.1	ACT domain-containing protein	-
IDSSA_RS09070 (IDSSA_0117660)	obgE	1817372..1818664 (-)	1293	WP_000496100.1	GTPase ObgE	-
IDSSA_RS09075 (IDSSA_0117670)	rpmA	1819019..1819303 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
IDSSA_RS09080 (IDSSA_0117680)	-	1819315..1819635 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IDSSA_RS09085 (IDSSA_0117690)	rplU	1819641..1819949 (-)	309	WP_000457385.1	50S ribosomal protein L21	-
IDSSA_RS09090 (IDSSA_0117700)	mreD	1820116..1820647 (-)	532	Protein_1791	rod shape-determining protein MreD	-
IDSSA_RS09095 (IDSSA_0117710)	mreC	1820647..1821489 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
IDSSA_RS09100	-	1821689..1821808 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22236.42 Da
• Isoelectric Point: 6.2380

>NTDB_id=77261 IDSSA_RS09060 WP_000271544.1 1816288..1816890(-) (ruvA) [Staphylococcus aureus strain IDSA1]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLHGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=77261 IDSSA_RS09060 WP_000271544.1 1816288..1816890(-) (ruvA) [Staphylococcus aureus strain IDSA1]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGCATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae R6	45.226	99.5	0.45
ruvA	Streptococcus pneumoniae D39	45.226	99.5	0.45
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.211	99.5	0.42