Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   O6R09_RS01615 Genome accession   NZ_CP114883
Coordinates   282653..283132 (+) Length   159 a.a.
NCBI ID   WP_154454798.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 277653..288132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS01615 (O6R09_01615) comX/sigX 282653..283132 (+) 480 WP_154454798.1 sigma-70 family RNA polymerase sigma factor Regulator
  O6R09_RS01620 (O6R09_01620) - 283167..284528 (-) 1362 WP_154455336.1 aspartate kinase -
  O6R09_RS01625 (O6R09_01625) - 284627..285280 (+) 654 WP_154455335.1 HAD family hydrolase -
  O6R09_RS01630 (O6R09_01630) - 285461..286249 (+) 789 Protein_262 enoyl-CoA hydratase -
  O6R09_RS01635 (O6R09_01635) - 286341..286775 (+) 435 WP_264879739.1 MarR family winged helix-turn-helix transcriptional regulator -
  O6R09_RS01640 (O6R09_01640) - 286778..287752 (+) 975 WP_154455333.1 beta-ketoacyl-ACP synthase III -
  O6R09_RS01645 (O6R09_01645) - 287814..288038 (+) 225 WP_154455332.1 acyl carrier protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19133.96 Da        Isoelectric Point: 6.2516

>NTDB_id=767316 O6R09_RS01615 WP_154454798.1 282653..283132(+) (comX/sigX) [Streptococcus alactolyticus strain LGM]
MKHFEYYYEKVKPIVLKLRRTYFVKLWDYDDWLQEGRIVLFQLLQDHPELLEAEGKLYPYFKTKFSNYVKDVIRHQESVK
CQFNQMGYEEISELDYCIAQPAFMQADDFIAYQDSLTALRQTFGAEGVSKLDRVMRGERFKGKSAFLRSIEPFFLDFKE

Nucleotide


Download         Length: 480 bp        

>NTDB_id=767316 O6R09_RS01615 WP_154454798.1 282653..283132(+) (comX/sigX) [Streptococcus alactolyticus strain LGM]
ATGAAACATTTTGAATACTACTATGAAAAAGTTAAACCCATTGTTTTAAAACTACGTCGCACTTATTTTGTGAAATTGTG
GGATTATGATGATTGGTTACAAGAAGGGAGAATTGTCCTCTTTCAGCTTTTACAAGATCATCCAGAATTACTTGAGGCAG
AGGGAAAGCTTTATCCTTACTTTAAAACTAAGTTTTCAAATTATGTGAAAGATGTGATTCGCCATCAAGAAAGTGTGAAA
TGTCAATTTAATCAGATGGGGTATGAGGAGATTAGTGAATTGGACTACTGTATTGCTCAACCTGCCTTTATGCAGGCCGA
TGACTTTATTGCCTATCAAGATAGTTTAACAGCTTTGCGTCAAACTTTTGGGGCAGAAGGTGTGTCAAAATTGGATCGTG
TGATGCGTGGGGAACGCTTTAAAGGCAAGAGTGCTTTTCTTAGAAGCATTGAACCTTTCTTTCTGGACTTTAAGGAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.