Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   O6R09_RS01245 Genome accession   NZ_CP114883
Coordinates   213697..214176 (+) Length   159 a.a.
NCBI ID   WP_154454798.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 212259..213515 213697..214176 flank 182


Gene organization within MGE regions


Location: 212259..214176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS01240 (O6R09_01240) - 212259..213515 (-) 1257 WP_269725618.1 ISL3 family transposase -
  O6R09_RS01245 (O6R09_01245) comX/sigX 213697..214176 (+) 480 WP_154454798.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19133.96 Da        Isoelectric Point: 6.2516

>NTDB_id=767313 O6R09_RS01245 WP_154454798.1 213697..214176(+) (comX/sigX) [Streptococcus alactolyticus strain LGM]
MKHFEYYYEKVKPIVLKLRRTYFVKLWDYDDWLQEGRIVLFQLLQDHPELLEAEGKLYPYFKTKFSNYVKDVIRHQESVK
CQFNQMGYEEISELDYCIAQPAFMQADDFIAYQDSLTALRQTFGAEGVSKLDRVMRGERFKGKSAFLRSIEPFFLDFKE

Nucleotide


Download         Length: 480 bp        

>NTDB_id=767313 O6R09_RS01245 WP_154454798.1 213697..214176(+) (comX/sigX) [Streptococcus alactolyticus strain LGM]
ATGAAACATTTTGAATACTACTATGAAAAAGTTAAACCCATTGTTTTAAAACTACGTCGCACTTATTTTGTGAAATTGTG
GGATTATGATGATTGGTTACAAGAAGGGAGAATTGTCCTCTTTCAGCTTTTACAAGATCATCCAGAATTACTTGAGGCAG
AGGGAAAGCTTTATCCTTACTTTAAAACTAAGTTTTCAAATTATGTGAAAGATGTGATTCGCCATCAAGAAAGTGTGAAA
TGTCAATTTAATCAGATGGGGTATGAGGAGATTAGTGAATTGGACTACTGTATTGCTCAACCTGCCTTTATGCAGGCCGA
TGACTTTATTGCCTATCAAGATAGTTTAACAGCTTTGCGTCAAACTTTTGGGGCAGAAGGTGTGTCAAAATTGGATCGTG
TGATGCGTGGGGAACGCTTTAAAGGCAAGAGTGCTTTTCTTAGAAGCATTGAACCTTTCTTTCTGGACTTTAAGGAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.