NTDB

Overview

Name	pilA2	Type	Machinery gene
Locus tag	OQB64_RS04565	Genome accession	NZ_CP110809
Coordinates	1006219..1006644 (+)	Length	141 a.a.
NCBI ID	WP_003392698.1	Uniprot ID	-
Organism	Pseudomonas syringae strain MUP32
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1001219..1011644

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OQB64_RS04540 (OQB64_04540)	yacG	1001379..1001588 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
OQB64_RS04545 (OQB64_04545)	coaE	1001585..1002208 (-)	624	WP_024648208.1	dephospho-CoA kinase	-
OQB64_RS04550 (OQB64_04550)	pilD	1002205..1003077 (-)	873	WP_024648207.1	A24 family peptidase	Machinery gene
OQB64_RS04555 (OQB64_04555)	pilC	1003079..1004296 (-)	1218	WP_024648206.1	type II secretion system F family protein	Machinery gene
OQB64_RS04560 (OQB64_04560)	pilB	1004299..1005993 (-)	1695	WP_024648205.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OQB64_RS04565 (OQB64_04565)	pilA2	1006219..1006644 (+)	426	WP_003392698.1	pilin	Machinery gene
OQB64_RS04570 (OQB64_04570)	-	1006785..1006956 (+)	172	Protein_897	DUF433 domain-containing protein	-
OQB64_RS04575 (OQB64_04575)	-	1007004..1007549 (-)	546	WP_003317774.1	DUF1523 family protein	-
OQB64_RS04580 (OQB64_04580)	-	1007669..1008667 (+)	999	WP_024648204.1	ATP-grasp domain-containing protein	-
OQB64_RS04585 (OQB64_04585)	-	1008722..1009861 (+)	1140	WP_024648203.1	trypsin-like peptidase domain-containing protein	-
OQB64_RS04590 (OQB64_04590)	-	1009928..1011061 (+)	1134	WP_024648202.1	phosphoribosyltransferase domain-containing protein	-

Sequence

Protein

Download Length: 141 a.a. Molecular weight: 14435.43 Da Isoelectric Point: 8.4743

                                >NTDB_id=756313 OQB64_RS04565 WP_003392698.1 1006219..1006644(+) (pilA2) [Pseudomonas syringae strain MUP32]

MRSQKGFTLIELMIVVAIVGILAAVALPAYQDYTVRAQVAELIGLTDGAKVAVTENYQSTGAFPASNQAAGYGGATGRYT

TSVVIGANGLITATADAVNSNPAIRGQTITLAPAVAAAGNNVVTWTCGGTIDQRFRPTSCR

Nucleotide

Download Length: 426 bp

                                >NTDB_id=756313 OQB64_RS04565 WP_003392698.1 1006219..1006644(+) (pilA2) [Pseudomonas syringae strain MUP32]

ATGAGATCACAAAAAGGTTTTACCCTTATTGAATTGATGATTGTTGTTGCAATCGTCGGTATCTTGGCGGCGGTCGCACT

GCCTGCATATCAGGATTATACGGTTCGAGCCCAAGTGGCTGAGCTGATCGGTCTGACTGATGGTGCTAAGGTCGCAGTTA

CTGAAAATTATCAATCAACAGGTGCATTTCCTGCTTCTAACCAAGCTGCTGGCTATGGCGGAGCAACTGGTCGCTATACG

ACTTCTGTAGTGATTGGTGCTAATGGATTGATTACCGCTACAGCTGATGCTGTAAACTCGAACCCTGCAATTCGTGGTCA

GACCATTACGCTGGCTCCGGCTGTGGCAGCCGCAGGTAATAATGTCGTTACATGGACATGCGGCGGTACTATTGACCAGC

GTTTCCGTCCGACGAGCTGCCGATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA2	Legionella pneumophila str. Paris	54.545	100	0.553
pilA2	Legionella pneumophila strain ERS1305867	54.545	100	0.553
pilE	Neisseria gonorrhoeae MS11	44.654	100	0.504
pilE	Neisseria gonorrhoeae strain FA1090	44.304	100	0.496
pilA/pilA1	Eikenella corrodens VA1	42.949	100	0.475
comP	Acinetobacter baylyi ADP1	40.94	100	0.433
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	36.196	100	0.418
pilA/pilAII	Pseudomonas stutzeri DSM 10701	40.559	100	0.411
pilA/pilAI	Pseudomonas stutzeri DSM 10701	39.437	100	0.397
pilA	Haemophilus influenzae 86-028NP	38.889	100	0.397
pilA	Acinetobacter baumannii strain A118	37.333	100	0.397
pilA	Pseudomonas aeruginosa PAK	34.641	100	0.376
pilA	Haemophilus influenzae Rd KW20	37.063	100	0.376

Detailed information NTG0756313