Detailed information NTG0756310

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP63_RS10080
• Genome accession: NZ_CP124420
• Coordinates: 2005329..2006321 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0155
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2000329..2011321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP63_RS10060 (QJP63_10060)	ygbM	2000967..2001743 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP63_RS10065 (QJP63_10065)	ygbN	2001832..2003196 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP63_RS10070 (QJP63_10070)	-	2003339..2004382 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP63_RS10075 (QJP63_10075)	-	2004607..2005158 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP63_RS10080 (QJP63_10080)	rpoS	2005329..2006321 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP63_RS10085 (QJP63_10085)	nlpD	2006384..2007478 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP63_RS10090 (QJP63_10090)	pcm	2007663..2008289 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP63_RS10095 (QJP63_10095)	surE	2008283..2009044 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP63_RS10100 (QJP63_10100)	truD	2009025..2010074 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP63_RS10105 (QJP63_10105)	ispF	2010071..2010550 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP63_RS10110 (QJP63_10110)	ispD	2010550..2011260 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=756310 QJP63_RS10080 WP_000081550.1 2005329..2006321(-) (rpoS) [Escherichia coli strain AVS0155]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=756310 QJP63_RS10080 WP_000081550.1 2005329..2006321(-) (rpoS) [Escherichia coli strain AVS0155]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715